4FEY

An X-ray Structure of a Putative Phosphogylcerate Kinase with Bound ADP from Francisella tularensis subsp. tularensis SCHU S4

• PDB DOI: https://doi.org/10.2210/pdb4FEY/pdb

• Classification: TRANSFERASE
• Organism(s): Francisella tularensis subsp. tularensis SCHU S4
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2012-05-30 Released: 2012-06-13 
• Deposition Author(s): Brunzelle, J.S., Wawrzak, Z., Skarina, T., Anderson, W.F., Savchenko, A., Center for Structural Genomics of Infectious Diseases (CSGID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 0.248 
• R-Value Work: 0.193 
• R-Value Observed: 0.196 

Starting Model: experimental

Literature

An X-ray Structure of a Putative Phosphogylcerate Kinase with Bound ADP from Francisella tularensis subsp. tularensis SCHU S4

Brunzelle, J.S., Wawrzak, Z., Skarina, T., Anderson, W.F., Savchenko, A., Center for Structural Genomics of Infectious Diseases

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 42.68 kDa 
• Atom Count: 3,101 
• Modelled Residue Count: 392 
• Deposited Residue Count: 395 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phosphoglycerate kinase	A	395	Francisella tularensis subsp. tularensis SCHU S4	Mutation(s): 0  Gene Names: FTT_1367c, pgk EC: 2.7.2.3
UniProt
Find proteins for Q5NF76 (Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4)) Explore Q5NF76  Go to UniProtKB:  Q5NF76

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ADP	B [auth A]	ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 0.248 
• R-Value Work: 0.193 
• R-Value Observed: 0.196 
• Space Group: I 4₁
• Diffraction Data: https://doi.org/10.18430/m34fey

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 66.616	α = 90
b = 66.616	β = 90
c = 206.524	γ = 90

Software Package:

Software Name	Purpose
BLU-MAX	data collection
PHASER	phasing
PHENIX	model building
BUSTER	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2012-06-13 
Deposition Author(s): Brunzelle, J.S., Wawrzak, Z., Skarina, T., Anderson, W.F., Savchenko, A., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History  

• Version 1.0: 2012-06-13
  Type: Initial release
  
• Version 1.1: 2023-09-13
  Changes: Data collection, Database references, Derived calculations, Refinement description