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 4FCX | pdb_00004fcx

S.pombe Mre11 apoenzym


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 
    0.286 (Depositor), 0.281 (DCC) 
  • R-Value Work: 
    0.227 (Depositor), 0.223 (DCC) 
  • R-Value Observed: 
    0.232 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 4FCX

This is version 1.3 of the entry. See complete history. 

Literature

Structure of Mre11-Nbs1 complex yields insights into ataxia-telangiectasia-like disease mutations and DNA damage signaling.

Schiller, C.B., Lammens, K., Guerini, I., Coordes, B., Feldmann, H., Schlauderer, F., Mockel, C., Schele, A., Strasser, K., Jackson, S.P., Hopfner, K.P.

(2012) Nat Struct Mol Biol 19: 693-700

  • DOI: https://doi.org/10.1038/nsmb.2323
  • Primary Citation Related Structures: 
    4FBK, 4FBQ, 4FBW, 4FCX

  • PubMed Abstract: 

    The Mre11-Rad50-Nbs1 (MRN) complex tethers, processes and signals DNA double-strand breaks, promoting genomic stability. To understand the functional architecture of MRN, we determined the crystal structures of the Schizosaccharomyces pombe Mre11 dimeric catalytic domain alone and in complex with a fragment of Nbs1. Two Nbs1 subunits stretch around the outside of the nuclease domains of Mre11, with one subunit additionally bridging and locking the Mre11 dimer via a highly conserved asymmetrical binding motif. Our results show that Mre11 forms a flexible dimer and suggest that Nbs1 not only is a checkpoint adaptor but also functionally influences Mre11-Rad50. Clinical mutations in Mre11 are located along the Nbs1-interaction sites and weaken the Mre11-Nbs1 interaction. However, they differentially affect DNA repair and telomere maintenance in Saccharomyces cerevisiae, potentially providing insight into their different human disease pathologies.


  • Organizational Affiliation: 
    • Gene Center, Ludwig Maximilians University Munich, Munich, Germany.

Macromolecule Content 

  • Total Structure Weight: 91.54 kDa 
  • Atom Count: 5,900 
  • Modeled Residue Count: 735 
  • Deposited Residue Count: 808 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
DNA repair protein rad32A [auth B],
B [auth A]
404Schizosaccharomyces pombe 972h-Mutation(s): 0 
Gene Names: rad32, SPAC13C5.07
EC: 3.1
UniProt
Find proteins for Q09683 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
Explore Q09683 
Go to UniProtKB:  Q09683
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ09683
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free:  0.286 (Depositor), 0.281 (DCC) 
  • R-Value Work:  0.227 (Depositor), 0.223 (DCC) 
  • R-Value Observed: 0.232 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 76.408α = 90
b = 82.262β = 90
c = 164.296γ = 90
Software Package:
Software NamePurpose
PHASERphasing
PHENIXrefinement
XDSdata reduction
XDSdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-06-20
    Type: Initial release
  • Version 1.1: 2012-07-25
    Changes: Database references
  • Version 1.2: 2017-11-15
    Changes: Advisory, Refinement description
  • Version 1.3: 2024-02-28
    Changes: Advisory, Data collection, Database references, Derived calculations