4EJE | pdb_00004eje

Structure Of The Tsg101 UEV Domain In Complex With an Ebola PTAP late Domain Peptide

PDB DOI: https://doi.org/10.2210/pdb4EJE/pdb

Classification: PROTEIN TRANSPORT
Organism(s): Homo sapiens, Ebola virus - Mayinga, Zaire, 1976
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2012-04-06 Released: 2013-04-10
Deposition Author(s): Camara-Artigas, A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.274 (Depositor), 0.275 (DCC)
R-Value Work:
0.211 (Depositor), 0.215 (DCC)
R-Value Observed:
0.217 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

To be published

Camara-Artigas, A., Palencia, A., Andujar-Sanchez, M., Iglesias-Bexiga, M., Luque, I., Martinez, J.C.

To be published.

Macromolecule Content

Total Structure Weight: 38.58 kDa
Atom Count: 2,529
Modeled Residue Count: 303
Deposited Residue Count: 336
Unique protein chains: 2

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tumor susceptibility gene 101 protein	A, B	159	Homo sapiens	Mutation(s): 0 Gene Names: TSG101
UniProt & NIH Common Fund Data Resources
Find proteins for Q99816 (Homo sapiens) Explore Q99816 Go to UniProtKB: Q99816
PHAROS: Q99816 GTEx: ENSG00000074319
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q99816
Sequence Annotations Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Matrix protein VP40	C, D	9	Ebola virus - Mayinga, Zaire, 1976	Mutation(s): 0
UniProt
Find proteins for Q05128 (Zaire ebolavirus (strain Mayinga-76)) Explore Q05128 Go to UniProtKB: Q05128
Entity Groups
UniProt Group	Q05128
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain E [auth A] MOL2 format, chain E [auth A] mmCIF format, chain E [auth A]	E [auth A]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain E [auth A] Interactions & Density Focus chain E [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.274 (Depositor), 0.275 (DCC)
R-Value Work: 0.211 (Depositor), 0.215 (DCC)
R-Value Observed: 0.217 (Depositor)

Space Group: I 4

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 105.544	α = 90
b = 105.544	β = 90
c = 75.304	γ = 90

Software Package:

Software Name	Purpose
MOSFLM	data reduction
SCALA	data scaling
MOLREP	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data collection

Structure Validation

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Entry History

Deposition Data

Released Date: 2013-04-10

Deposition Author(s):

Camara-Artigas, A.

Revision History (Full details and data files)

Version 1.0: 2013-04-10
Type: Initial release
Version 1.1: 2018-01-24
Changes: Database references
Version 1.2: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.