4DM5 | pdb_00004dm5

Putative Osmotically inducible lipoprotein OsmE characterization by Xray crystallography

PDB DOI: https://doi.org/10.2210/pdb4DM5/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Pseudomonas aeruginosa PAO1
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2012-02-07 Released: 2012-03-07
Deposition Author(s): Mamelli, L., Spinelli, S., Goemaere, E., Vuillard, L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free:
0.209 (Depositor), 0.206 (DCC)
R-Value Work:
0.179 (Depositor), 0.177 (DCC)
R-Value Observed:
0.180 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Putative Osmotically inducible lipoprotein OsmE characterization by Xray crystallography

Mamelli, L., Spinelli, S., Goemaere, E., Vuillard, L.

To be published.

Macromolecule Content

Total Structure Weight: 47.04 kDa
Atom Count: 3,192
Modeled Residue Count: 356
Deposited Residue Count: 412
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Osmotically inducible lipoprotein OsmE	A, B, C, D	103	Pseudomonas aeruginosa PAO1	Mutation(s): 0 Gene Names: osmE, PA4876
UniProt
Find proteins for Q9HUT7 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore Q9HUT7 Go to UniProtKB: Q9HUT7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9HUT7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain E [auth A] MOL2 format, chain E [auth A] mmCIF format, chain E [auth A]	E [auth A]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Interactions & Density Focus chain E [auth A]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free: 0.209 (Depositor), 0.206 (DCC)
R-Value Work: 0.179 (Depositor), 0.177 (DCC)
R-Value Observed: 0.180 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.13	α = 94.2
b = 44.26	β = 93.92
c = 59.28	γ = 116.07

Software Package:

Software Name	Purpose
XDS	data scaling
SHELXS	phasing
REFMAC	refinement
XSCALE	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2012-03-07

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2012-03-07
Type: Initial release
Version 1.1: 2024-10-09
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.