4CCF | pdb_00004ccf

Structure of Respiratory Syncytial Virus F protein head domain

PDB DOI: https://doi.org/10.2210/pdb4CCF/pdb

Classification: VIRAL PROTEIN
Organism(s): Respiratory syncytial virus
Mutation(s): No

Deposited: 2013-10-22 Released: 2013-11-13
Deposition Author(s): Peat, T.S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.65 Å
R-Value Free:
0.247 (Depositor), 0.247 (DCC)
R-Value Work:
0.215 (Depositor), 0.215 (DCC)
R-Value Observed:
0.216 (Depositor)

Starting Model: experimental
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This is version 1.3 of the entry. See complete history.

Literature

Structure of Respiratory Syncytial Virus F Protein Head Domain

Peat, T.S.

To be published.

Macromolecule Content

Total Structure Weight: 381.07 kDa
Atom Count: 12,234
Modeled Residue Count: 1,574
Deposited Residue Count: 3,444
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
FUSION GLYCOPROTEIN F0	A, B, C, D, E A, B, C, D, E, F	574	Respiratory syncytial virus	Mutation(s): 0
UniProt
Find proteins for P03420 (Human respiratory syncytial virus A (strain A2)) Explore P03420 Go to UniProtKB: P03420
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P03420
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain G [auth C] SDF format, chain H [auth D] SDF format, chain I [auth E] MOL2 format, chain G [auth C] MOL2 format, chain H [auth D] MOL2 format, chain I [auth E] mmCIF format, chain G [auth C] mmCIF format, chain H [auth D] mmCIF format, chain I [auth E]	G [auth C], H [auth D], I [auth E]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain G [auth C] Focus chain H [auth D] Focus chain I [auth E] Interactions & Density Focus chain G [auth C] Focus chain H [auth D] Focus chain I [auth E]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.65 Å
R-Value Free: 0.247 (Depositor), 0.247 (DCC)
R-Value Work: 0.215 (Depositor), 0.215 (DCC)
R-Value Observed: 0.216 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 68.38	α = 90
b = 133.501	β = 93.32
c = 116.42	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2013-11-13

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2013-11-13
Type: Initial release
Version 1.1: 2015-09-16
Changes: Database references
Version 1.2: 2023-12-20
Changes: Data collection, Database references, Derived calculations, Other, Refinement description
Version 1.3: 2024-10-16
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.