4C7M | pdb_00004c7m

The crystal structure of TcpB or BtpA TIR domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.57 Å
  • R-Value Free: 
    0.240 (Depositor), 0.257 (DCC) 
  • R-Value Work: 
    0.232 (Depositor), 0.239 (DCC) 
  • R-Value Observed: 
    0.232 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 4C7M

This is version 1.3 of the entry. See complete history

Literature

Mechanism of bacterial interference with TLR4 signaling by Brucella Toll/interleukin-1 receptor domain-containing protein TcpB.

Alaidarous, M.Ve, T.Casey, L.W.Valkov, E.Ericsson, D.J.Ullah, M.O.Schembri, M.A.Mansell, A.Sweet, M.J.Kobe, B.

(2014) J Biological Chem 289: 654-668

  • DOI: https://doi.org/10.1074/jbc.M113.523274
  • Primary Citation Related Structures: 
    4C7M

  • PubMed Abstract: 

    Upon activation of Toll-like receptors (TLRs), cytoplasmic Toll/interleukin-1 receptor (TIR) domains of the receptors undergo homo- or heterodimerization. This in turn leads to the recruitment of adaptor proteins, activation of transcription factors, and the secretion of pro-inflammatory cytokines. Recent studies have described the TIR domain-containing protein from Brucella melitensis, TcpB (BtpA/Btp1), to be involved in virulence and suppression of host innate immune responses. TcpB interferes with TLR4 and TLR2 signaling pathways by a mechanism that remains controversial. In this study, we show using co-immunoprecipitation analyses that TcpB interacts with MAL, MyD88, and TLR4 but interferes only with the MAL-TLR4 interaction. We present the crystal structure of the TcpB TIR domain, which reveals significant structural differences in the loop regions compared with other TIR domain structures. We demonstrate that TcpB forms a dimer in solution, and the crystal structure reveals the dimerization interface, which we validate by mutagenesis and biophysical studies. Our study advances the understanding of the molecular mechanisms of host immunosuppression by bacterial pathogens.


  • Organizational Affiliation
    • From the School of Chemistry and Molecular Biosciences.

Macromolecule Content 

  • Total Structure Weight: 60.24 kDa 
  • Atom Count: 4,069 
  • Modeled Residue Count: 509 
  • Deposited Residue Count: 536 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Toll/interleukin-1 receptor domain-containing protein
A, B, C, D
134Brucella melitensisMutation(s): 0 
Gene Names: EXD79_08750

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.57 Å
  • R-Value Free:  0.240 (Depositor), 0.257 (DCC) 
  • R-Value Work:  0.232 (Depositor), 0.239 (DCC) 
  • R-Value Observed: 0.232 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 51.966α = 90
b = 73.676β = 93.29
c = 74.759γ = 90
Software Package:
Software NamePurpose
BUSTERrefinement
XDSdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-12-04
    Type: Initial release
  • Version 1.1: 2014-01-29
    Changes: Database references
  • Version 1.2: 2019-09-25
    Changes: Data collection, Database references, Experimental preparation, Other, Source and taxonomy, Structure summary
  • Version 1.3: 2023-12-20
    Changes: Data collection, Database references, Refinement description