4BWN

NEMO CC2-LZ DOMAIN

PDB DOI: https://doi.org/10.2210/pdb4BWN/pdb

Classification: SIGNALING PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2013-07-03 Released: 2014-07-23
Deposition Author(s): Dubosclard, V., Duquerroy, S., Fontan, E., Agou, F.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.27 Å
R-Value Free: 0.246
R-Value Work: 0.215
R-Value Observed: 0.216

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

High-Resolution of Crystal Structure of the Human Cc2-Lz Domain of Nemo by Protein Engineering

Dubosclard, V., Duquerroy, S., Fontan, E., Agou, F.

To be published.

Macromolecule Content

Total Structure Weight: 25.62 kDa
Atom Count: 1,449
Modelled Residue Count: 172
Deposited Residue Count: 220
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
NF-KAPPA-B ESSENTIAL MODULATOR	A, B	110	Homo sapiens	Mutation(s): 1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y6K9 (Homo sapiens) Explore Q9Y6K9 Go to UniProtKB: Q9Y6K9
PHAROS: Q9Y6K9 GTEx: ENSG00000269335
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9Y6K9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.27 Å
R-Value Free: 0.246
R-Value Work: 0.215
R-Value Observed: 0.216
Space Group: P 6₅

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 70.353	α = 90
b = 70.353	β = 90
c = 78.981	γ = 120

Software Package:

Software Name	Purpose
BUSTER	refinement
XDS	data reduction
SCALA	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2014-07-23

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2014-07-23
Type: Initial release
Version 1.1: 2014-10-29
Changes: Refinement description
Version 1.2: 2021-04-28
Changes: Data collection, Other
Version 1.3: 2023-12-20
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.