4BTZ | pdb_00004btz

Crystal Structure of peroxinitrite treated Major Birch Pollen Allergen Bet v 1.0101 (isoform a)

PDB DOI: https://doi.org/10.2210/pdb4BTZ/pdb

Classification: IMMUNE SYSTEM
Organism(s): Betula pendula
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2013-06-19 Released: 2014-07-02
Deposition Author(s): Kofler, S.G., Ackaert, C., Brandstetter, H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.47 Å
R-Value Free:
0.235 (Depositor), 0.235 (DCC)
R-Value Work:
0.188 (Depositor), 0.191 (DCC)
R-Value Observed:
0.190 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

The Crystal Structure of the Major Birch Pollen Allergen Bet V 1 After Nitration with Peroxinitrite

Kofler, S.G., Ackaert, C., Brandstetter, H.

To be published.

Macromolecule Content

Total Structure Weight: 17.76 kDa
Atom Count: 1,386
Modeled Residue Count: 159
Deposited Residue Count: 159
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
MAJOR POLLEN ALLERGEN BET V 1-A	A	159	Betula pendula	Mutation(s): 0
UniProt
Find proteins for P15494 (Betula pendula) Explore P15494 Go to UniProtKB: P15494
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P15494
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MPD Query on MPD Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	(4S)-2-METHYL-2,4-PENTANEDIOL C₆ H₁₄ O₂ SVTBMSDMJJWYQN-YFKPBYRVSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
NIY Query on NIY	A	L-PEPTIDE LINKING	C₉ H₁₀ N₂ O₅		TYR

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.47 Å
R-Value Free: 0.235 (Depositor), 0.235 (DCC)
R-Value Work: 0.188 (Depositor), 0.191 (DCC)
R-Value Observed: 0.190 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 32.4	α = 90
b = 54.55	β = 93.04
c = 37.61	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
iMOSFLM	data reduction
SCALA	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2014-07-02

Deposition Author(s):

Brandstetter, H.

Revision History (Full details and data files)

Version 1.0: 2014-07-02
Type: Initial release
Version 1.1: 2023-12-20
Changes: Data collection, Database references, Derived calculations, Other, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.