4BEV | pdb_00004bev

ATPase crystal structure with bound phosphate analogue

• PDB DOI: https://doi.org/10.2210/pdb4BEV/pdb

• Classification: HYDROLASE
• Organism(s): Legionella pneumophila
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 
• Membrane Protein: Yes  PDBTMMemProtMD


• Deposited: 2013-03-12 Released: 2014-04-02 
• Deposition Author(s): Mattle, D., Drachmann, N.D., Liu, X.Y., Gourdon, P., Pedersen, B.P., Morth, P., Wang, J., Nissen, P.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.58 Å
• R-Value Free: 
  0.315 (Depositor), 0.318 (DCC) 
• R-Value Work: 
  0.270 (Depositor), 0.286 (DCC) 
• R-Value Observed: 
  0.272 (Depositor) 

Literature

ATPase Crystal Structure with Bound Phosphate Analogue

Mattle, D., Drachmann, N.D., Liu, X.Y., Gourdon, P., Pedersen, B.P., Morth, P., Wang, J., Nissen, P.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 78.44 kDa 
• Atom Count: 4,941 
• Modeled Residue Count: 663 
• Deposited Residue Count: 736 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
COPPER EFFLUX ATPASE	A	736	Legionella pneumophila	Mutation(s): 0  EC: 3.6.3 (PDB Primary Data), 7.2.2.8 (UniProt) Membrane Entity: Yes
UniProt
Find proteins for Q5ZWR1 (Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)) Explore Q5ZWR1  Go to UniProtKB:  Q5ZWR1

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
MGF	C [auth A]	TRIFLUOROMAGNESATE F3 Mg GJOMWUHGUQLOAC-UHFFFAOYSA-K
MG	B [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.58 Å
• R-Value Free:  0.315 (Depositor), 0.318 (DCC) 
• R-Value Work:  0.270 (Depositor), 0.286 (DCC) 
• R-Value Observed: 0.272 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 44.36	α = 90
b = 72.65	β = 90
c = 328.79	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2014-04-02 
Deposition Author(s): Mattle, D., Drachmann, N.D., Liu, X.Y., Gourdon, P., Pedersen, B.P., Morth, P., Wang, J., Nissen, P.

Revision History  

• Version 1.0: 2014-04-02
  Type: Initial release
  
• Version 1.1: 2024-05-08
  Changes: Data collection, Database references, Derived calculations, Other