4B03

6A Electron cryomicroscopy structure of immature Dengue virus serotype 1


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Immature and Mature Dengue Serotype 1 Virus Structures Provide Insight Into the Maturation Process.

Kostyuchenko, V.A.Zhang, Q.Tan, J.L.Ng, T.S.Lok, S.M.

(2013) J Virol 87: 7700

  • DOI: https://doi.org/10.1128/JVI.00197-13
  • Primary Citation of Related Structures:  
    4B03, 4CCT

  • PubMed Abstract: 

    Dengue virus is a major human pathogen that has four serotypes (DENV1 to -4). Here we report the cryoelectron microscopy (cryo-EM) structures of immature and mature DENV1 at 6- and 4.5-Å resolution, respectively. The subnanometer-resolution maps allow accurate placement of all of the surface proteins. Although the immature and mature viruses showed vastly different surface protein organizations, the envelope protein transmembrane (E-TM) regions remain in similar positions. The pivotal role of the E-TM regions leads to the identification of the start and end positions of all surface proteins during maturation.


  • Organizational Affiliation

    Program in Emerging Infectious Diseases, Duke-NUS Graduate Medical School, Singapore.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DENGUE VIRUS 1 E PROTEIN
A, B, C
495dengue virus type 1Mutation(s): 0 
UniProt
Find proteins for G3F5K5 (dengue virus type 1)
Explore G3F5K5 
Go to UniProtKB:  G3F5K5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG3F5K5
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
DENGUE VIRUS 1 PRM PROTEIN
D, E, F
166dengue virus type 1Mutation(s): 0 
UniProt
Find proteins for G3F5K5 (dengue virus type 1)
Explore G3F5K5 
Go to UniProtKB:  G3F5K5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG3F5K5
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONEMAN1
RECONSTRUCTIONEMAN2

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-06-05
    Type: Initial release
  • Version 1.1: 2013-06-26
    Changes: Database references
  • Version 1.2: 2017-04-19
    Changes: Other
  • Version 1.3: 2017-08-30
    Changes: Data collection
  • Version 1.4: 2024-05-08
    Changes: Data collection, Database references, Derived calculations, Refinement description