4AQ5 | pdb_00004aq5

Gating movement in acetylcholine receptor analysed by time-resolved electron cryo-microscopy (closed class)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.20 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: HELICAL 

Starting Model: experimental
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This is version 1.5 of the entry. See complete history

Literature

Gating Movement of Acetylcholine Receptor Caught by Plunge-Freezing.

Unwin, N.Fujiyoshi, Y.

(2012) J Mol Biology 422: 617

  • DOI: https://doi.org/10.1016/j.jmb.2012.07.010
  • Primary Citation Related Structures: 
    4AQ5, 4AQ9

  • PubMed Abstract: 

    The nicotinic acetylcholine (ACh) receptor converts transiently to an open-channel form when activated by ACh released into the synaptic cleft. We describe here the conformational change underlying this event, determined by electron microscopy of ACh-sprayed and freeze-trapped postsynaptic membranes. ACh binding to the α subunits triggers a concerted rearrangement in the ligand-binding domain, involving an ~1-Å outward displacement of the extracellular portion of the β subunit where it interacts with the juxtaposed ends of α-helices shaping the narrow membrane-spanning pore. The β-subunit helices tilt outward to accommodate this displacement, destabilising the arrangement of pore-lining helices, which in the closed channel bend inward symmetrically to form a central hydrophobic gate. Straightening and tangential motion of the pore-lining helices effect channel opening by widening the pore asymmetrically and increasing its polarity in the region of the gate. The pore-lining helices of the α(γ) and δ subunits, by flexing between alternative bent and straight conformations, undergo the greatest movements. This coupled allosteric transition shifts the structure from a tense (closed) state toward a more relaxed (open) state.


  • Organizational Affiliation
    • MRC Laboratory of Molecular Biology, Hills Road, Cambridge CB2 0QH, UK. Electronic address: unwin@mrc-lmb.cam.ac.uk.

Macromolecule Content 

  • Total Structure Weight: 278.07 kDa 
  • Atom Count: 14,924 
  • Modeled Residue Count: 1,851 
  • Deposited Residue Count: 2,425 
  • Unique protein chains: 4

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
ACETYLCHOLINE RECEPTOR SUBUNIT ALPHA
A, D
461Torpedo marmorataMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P02711 (Torpedo marmorata)
Explore P02711 
Go to UniProtKB:  P02711
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP02711
Sequence Annotations
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
ACETYLCHOLINE RECEPTOR BETA SUBUNIT493Torpedo marmorataMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q6S3I0 (Torpedo marmorata)
Explore Q6S3I0 
Go to UniProtKB:  Q6S3I0
Entity Groups
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UniProt GroupQ6S3I0
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
ACETYLCHOLINE RECEPTOR DELTA SUBUNIT522Torpedo marmorataMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q6S3H8 (Torpedo marmorata)
Explore Q6S3H8 
Go to UniProtKB:  Q6S3H8
Entity Groups
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UniProt GroupQ6S3H8
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
ACETYLCHOLINE RECEPTOR GAMMA SUBUNIT488Torpedo marmorataMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q6S3H9 (Torpedo marmorata)
Explore Q6S3H9 
Go to UniProtKB:  Q6S3H9
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6S3H9
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.20 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONCustom
RECONSTRUCTIONMRC IMAGE PROCESSING PACKAGE

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-08-01
    Type: Initial release
  • Version 1.1: 2012-09-12
    Changes: Database references
  • Version 1.2: 2013-09-25
    Changes: Other
  • Version 1.3: 2017-08-30
    Changes: Data collection
  • Version 1.4: 2019-10-23
    Changes: Data collection, Other
  • Version 1.5: 2024-11-20
    Changes: Data collection, Database references, Refinement description, Structure summary