44JD | pdb_000044jd

KIR2DS1 bound to HLA-C*06:02 presenting the SV9 peptide

• PDB DOI: https://doi.org/10.2210/pdb44JD/pdb

• Classification: IMMUNE SYSTEM
• Organism(s): Homo sapiens, synthetic construct
• Expression System: Escherichia coli BL21
• Mutation(s): Yes 


• Deposited: 2026-07-31 Released: 2026-11-11 
• Deposition Author(s): Faoro, C., Rossjohn, J.
• Funding Organization(s): National Health and Medical Research Council (NHMRC, Australia)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 
  0.233 (Depositor), 0.233 (DCC) 
• R-Value Work: 
  0.182 (Depositor), 0.186 (DCC) 
• R-Value Observed: 
  0.184 (Depositor) 

Starting Model: experimental

Literature

KIR2DS1 bound to HLA-C*06:02 presenting the SV9 peptide

Faoro, C., Rossjohn, J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 4-mer - A1B1C1D1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: surface plasmon resonance

Macromolecule Content 

• Total Structure Weight: 67.81 kDa 
• Atom Count: 4,771 
• Modeled Residue Count: 577 
• Deposited Residue Count: 589 
• Unique protein chains: 4

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
HLA class I histocompatibility antigen, C alpha chain	A	276	Homo sapiens	Mutation(s): 13  Gene Names: HLA-C, HLAC
UniProt & NIH Common Fund Data Resources
Find proteins for P10321 (Homo sapiens) Explore P10321  Go to UniProtKB:  P10321
PHAROS:  P10321 GTEx:  ENSG00000204525

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Beta-2-microglobulin	B	100	Homo sapiens	Mutation(s): 0  Gene Names: B2M
UniProt & NIH Common Fund Data Resources
Find proteins for P61769 (Homo sapiens) Explore P61769  Go to UniProtKB:  P61769
GTEx:  ENSG00000166710

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
SV9 peptide	C	9	synthetic construct	Mutation(s): 0

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Killer cell immunoglobulin-like receptor 2DS1	D	204	Homo sapiens	Mutation(s): 0  Gene Names: KIR2DS1, CD158H
UniProt
Find proteins for Q14954 (Homo sapiens) Explore Q14954  Go to UniProtKB:  Q14954

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	F [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
GOL	E [auth A], G [auth B]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free:  0.233 (Depositor), 0.233 (DCC) 
• R-Value Work:  0.182 (Depositor), 0.186 (DCC) 
• R-Value Observed: 0.184 (Depositor) 

Space Group: I 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.904	α = 90
b = 66.26	β = 92.586
c = 133.5	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2026-11-11 
Deposition Author(s): Faoro, C., Rossjohn, J.

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Funding Organization	Location	Grant Number
National Health and Medical Research Council (NHMRC, Australia)	Australia	--

Revision History  

• Version 1.0: 2026-11-11
  Type: Initial release