3RAO | pdb_00003rao

Crystal Structure of the Luciferase-like Monooxygenase from Bacillus cereus ATCC 10987.

• PDB DOI: https://doi.org/10.2210/pdb3RAO/pdb

• Classification: Structural Genomics, Unknown function
• Organism(s): Bacillus cereus ATCC 10987
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2011-03-28 Released: 2011-05-11 
• Deposition Author(s): Domagalski, M.J., Chruszcz, M., Xu, X., Cui, H., Chin, S., Savchenko, A., Edwards, A., Joachimiak, A., Minor, W., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 
  0.210 (Depositor), 0.211 (DCC) 
• R-Value Work: 
  0.168 (Depositor), 0.170 (DCC) 
• R-Value Observed: 
  0.170 (Depositor) 

Literature

Crystal Structure of the Luciferase-like Monooxygenase from Bacillus cereus ATCC 10987.

Domagalski, M.J., Chruszcz, M., Xu, X., Cui, H., Chin, S., Savchenko, A., Edwards, A., Joachimiak, A., Minor, W.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 85.94 kDa 
• Atom Count: 5,822 
• Modeled Residue Count: 690 
• Deposited Residue Count: 742 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative Luciferase-like Monooxygenase	A, B	371	Bacillus cereus ATCC 10987	Mutation(s): 0  Gene Names: BCE_1067
UniProt
Find proteins for Q73CJ8 (Bacillus cereus (strain ATCC 10987 / NRS 248)) Explore Q73CJ8  Go to UniProtKB:  Q73CJ8

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	C [auth A], D [auth A], E [auth A], F [auth A], G [auth B], H [auth B], I [auth B], J [auth B], K [auth B], L [auth B]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free:  0.210 (Depositor), 0.211 (DCC) 
• R-Value Work:  0.168 (Depositor), 0.170 (DCC) 
• R-Value Observed: 0.170 (Depositor) 

Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 126.807	α = 90
b = 126.807	β = 90
c = 124.234	γ = 120

Software Package:

Software Name	Purpose
HKL-3000	data collection
HKL-3000	phasing
SHELXD	phasing
SHELXE	model building
DM	model building
MLPHARE	phasing
CCP4	model building
RESOLVE	model building
ARP/wARP	model building
REFMAC	refinement
Coot	model building
HKL-3000	data reduction
HKL-3000	data scaling
DM	phasing
CCP4	phasing
RESOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-05-11 
Deposition Author(s): Domagalski, M.J., Chruszcz, M., Xu, X., Cui, H., Chin, S., Savchenko, A., Edwards, A., Joachimiak, A., Minor, W., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2011-05-11
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2017-11-08
  Changes: Refinement description
• Version 1.3: 2022-04-13
  Changes: Database references, Derived calculations, Structure summary
• Version 1.4: 2024-11-27
  Changes: Data collection, Refinement description, Structure summary