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Crystal Structure of the Luciferase-like Monooxygenase from Bacillus cereus ATCC 10987.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 0.1M NaHepes, pH 7.5, 4%PEG400, 2M Ammonium Sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.39 63.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 126.807 α = 90 b = 126.807 β = 90 c = 124.234 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-03-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9793 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 96.6 0.092 0.092 25.3 4.1 50096 50096 -3 47
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.34 98.3 0.66 0.66 2.6 4.1 2529
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 50 47374 47374 2536 96.65 0.16987 0.16987 0.16775 0.1699 0.20994 0.2113 RANDOM 47.199
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.38 -0.19 -0.38 0.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.202 r_dihedral_angle_4_deg 16.448 r_dihedral_angle_3_deg 13.52 r_dihedral_angle_1_deg 5.967 r_angle_refined_deg 1.399 r_angle_other_deg 0.911 r_chiral_restr 0.087 r_bond_refined_d 0.015 r_bond_other_d 0.011 r_gen_planes_refined 0.006
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.202 r_dihedral_angle_4_deg 16.448 r_dihedral_angle_3_deg 13.52 r_dihedral_angle_1_deg 5.967 r_angle_refined_deg 1.399 r_angle_other_deg 0.911 r_chiral_restr 0.087 r_bond_refined_d 0.015 r_bond_other_d 0.011 r_gen_planes_refined 0.006 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5474 Nucleic Acid Atoms Solvent Atoms 285 Heterogen Atoms 50
Software Software Software Name Purpose HKL-3000 data collection HKL-3000 phasing SHELXD phasing SHELXE model building DM model building MLPHARE phasing CCP4 model building RESOLVE model building ARP/wARP model building REFMAC refinement Coot model building HKL-3000 data reduction HKL-3000 data scaling DM phasing CCP4 phasing RESOLVE phasing