3R90 | pdb_00003r90

Crystal structure of Malignant T cell-amplified sequence 1 protein

• PDB DOI: https://doi.org/10.2210/pdb3R90/pdb

• Classification: RNA BINDING PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2011-03-24 Released: 2011-04-13 
• Deposition Author(s): Hong, B., Dimov, S., Tempel, W., Tong, Y., Wernimont, A.K., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Park, H., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 
  0.235 (Depositor), 0.231 (DCC) 
• R-Value Work: 
  0.202 (Depositor), 0.200 (DCC) 
• R-Value Observed: 
  0.202 (Depositor) 

Literature

Crystal structure of Malignant T cell-amplified sequence 1 protein

Hong, B., Dimov, S., Tempel, W., Tong, Y., Wernimont, A.K., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Park, H.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D6  (Explore in 3D)
Global Stoichiometry: Homo 12-mer - A12 

Biological assembly 1 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 258.24 kDa 
• Atom Count: 19,275 
• Modeled Residue Count: 2,201 
• Deposited Residue Count: 2,256 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Malignant T cell-amplified sequence 1	A, B, C, D, E, F, G, H, I, J, K, L	188	Homo sapiens	Mutation(s): 3  Gene Names: MCTS1, MCT1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9ULC4 (Homo sapiens) Explore Q9ULC4  Go to UniProtKB:  Q9ULC4
PHAROS:  Q9ULC4 GTEx:  ENSG00000232119

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	EC [auth F], FC [auth F], GA [auth B], GC [auth F], GF [auth J], HA [auth B], HB [auth D], HF [auth J], IB [auth D], IE [auth I], M [auth A], MD [auth H], N [auth A], ND [auth H], O [auth A], PG [auth L], QG [auth L], RA [auth C], RB [auth E], SA [auth C], SB [auth E], WF [auth K], XF [auth K], YC [auth G], YF [auth K]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
GOL	RG [auth L]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N
UNX	AA [auth A], AB [auth C], AC [auth E], AD [auth G], AE [auth H], AF [auth I], AG [auth K], AH [auth L], BA [auth A], BB [auth C], BC [auth E], BD [auth G], BE [auth H], BF [auth I], BG [auth K], BH [auth L], CA [auth A], CB [auth C], CC [auth E], CD [auth G], CE [auth H], CF [auth I], CG [auth K], CH [auth L], DA [auth A], DB [auth C], DC [auth E], DD [auth G], DE [auth H], DF [auth I], DG [auth K], DH [auth L], EA [auth A], EB [auth C], ED [auth G], EE [auth H], EF [auth I], EG [auth K], FA [auth A], FB [auth C], FD [auth G], FE [auth H], FF [auth I], FG [auth K], GB [auth C], GD [auth G], GE [auth H], GG [auth K], HC [auth F], HD [auth G], HE [auth H], HG [auth K], IA [auth B], IC [auth F], ID [auth G], IF [auth J], IG [auth K], JA [auth B], JB [auth D], JC [auth F], JD [auth G], JE [auth I], JF [auth J], JG [auth K], KA [auth B], KB [auth D], KC [auth F], KD [auth G], KE [auth I], KF [auth J], KG [auth K], LA [auth B], LB [auth D], LC [auth F], LD [auth G], LE [auth I], LF [auth J], LG [auth K], MA [auth B], MB [auth D], MC [auth F], ME [auth I], MF [auth J], MG [auth K], NA [auth B], NB [auth D], NC [auth F], NE [auth I], NF [auth J], NG [auth K], OA [auth B], OB [auth D], OC [auth F], OD [auth H], OE [auth I], OF [auth J], OG [auth K], P [auth A], PA [auth B], PB [auth D], PC [auth F], PD [auth H], PE [auth I], PF [auth J], Q [auth A], QA [auth B], QB [auth D], QC [auth F], QD [auth H], QE [auth I], QF [auth J], R [auth A], RC [auth F], RD [auth H], RE [auth I], RF [auth J], S [auth A], SC [auth F], SD [auth H], SE [auth I], SF [auth J], SG [auth L], T [auth A], TA [auth C], TB [auth E], TC [auth F], TD [auth H], TE [auth I], TF [auth J], TG [auth L], U [auth A], UA [auth C], UB [auth E], UC [auth F], UD [auth H], UE [auth I], UF [auth J], UG [auth L], V [auth A], VA [auth C], VB [auth E], VC [auth F], VD [auth H], VE [auth I], VF [auth J], VG [auth L], W [auth A], WA [auth C], WB [auth E], WC [auth F], WD [auth H], WE [auth I], WG [auth L], X [auth A], XA [auth C], XB [auth E], XC [auth F], XD [auth H], XE [auth I], XG [auth L], Y [auth A], YA [auth C], YB [auth E], YD [auth H], YE [auth I], YG [auth L], Z [auth A], ZA [auth C], ZB [auth E], ZC [auth G], ZD [auth H], ZE [auth I], ZF [auth K], ZG [auth L]	UNKNOWN ATOM OR ION X

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free:  0.235 (Depositor), 0.231 (DCC) 
• R-Value Work:  0.202 (Depositor), 0.200 (DCC) 
• R-Value Observed: 0.202 (Depositor) 

Diffraction Data: https://doi.org/10.18430/m33r90

Space Group: P 3₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 115.59	α = 90
b = 115.59	β = 90
c = 157.79	γ = 120

Software Package:

Software Name	Purpose
XSCALE	data scaling
SHELX	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
DENZO	data reduction
XDS	data reduction
SCALEPACK	data scaling
Coot	model building
MolProbity	model building

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-04-13 
Deposition Author(s): Hong, B., Dimov, S., Tempel, W., Tong, Y., Wernimont, A.K., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Park, H., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2011-04-13
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2017-11-08
  Changes: Refinement description
• Version 1.3: 2024-02-21
  Changes: Data collection, Database references, Derived calculations