☰ Navigation Tabs
Crystal structure of Malignant T cell-amplified sequence 1 protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 293 2.5M ammonium sulfate, 0.1M Bis-Tris propane, pH 7, VAPOR DIFFUSION, temperature 293K 2 VAPOR DIFFUSION 7 293 Se-Met derivative. 2.5M ammonium sulfate, 0.1M Bis-Tris propane, 2% PEG-3350, pH 7, VAPOR DIFFUSION, temperature 293K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 115.59 α = 90 b = 115.59 β = 90 c = 157.79 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2011-02-25 M SINGLE WAVELENGTH 2 1 100 CCD MARMOSAIC 300 mm CCD 2011-03-11
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97901 APS 19-ID 2 SYNCHROTRON APS BEAMLINE 23-ID-D 0.97944 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 40 99.9 0.084 13.33 259245 -3 26.989
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.74 100 0.869 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 28.42 259167 5105 99.924 0.202 0.2015 0.1998 0.2353 0.2309 THIN SHELLS (SFTOOLS) 16.874
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.535 -0.267 -0.535 0.802
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.252 r_dihedral_angle_3_deg 11.929 r_dihedral_angle_4_deg 11.831 r_dihedral_angle_1_deg 5.915 r_scangle_it 4.293 r_angle_other_deg 4.225 r_scbond_it 2.596 r_mcangle_it 1.678 r_angle_refined_deg 1.267 r_mcbond_it 0.951
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.252 r_dihedral_angle_3_deg 11.929 r_dihedral_angle_4_deg 11.831 r_dihedral_angle_1_deg 5.915 r_scangle_it 4.293 r_angle_other_deg 4.225 r_scbond_it 2.596 r_mcangle_it 1.678 r_angle_refined_deg 1.267 r_mcbond_it 0.951 r_chiral_restr 0.082 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_gen_planes_other 0.005 r_bond_other_d r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 17050 Nucleic Acid Atoms Solvent Atoms 1374 Heterogen Atoms 305
Software Software Software Name Purpose XSCALE data scaling SHELX phasing REFMAC refinement PDB_EXTRACT data extraction DENZO data reduction XDS data reduction SCALEPACK data scaling Coot model building MolProbity model building