3R0A | pdb_00003r0a

Possible transcriptional regulator from Methanosarcina mazei Go1 (gi 21227196)

PDB DOI: https://doi.org/10.2210/pdb3R0A/pdb

Classification: Transcription regulator
Organism(s): Methanosarcina mazei
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2011-03-07 Released: 2011-03-23
Deposition Author(s): Joachimiak, A., Duke, N.E.C., Li, H., Gu, M., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.31 Å
R-Value Free:
0.363 (Depositor), 0.352 (DCC)
R-Value Work:
0.266 (Depositor), 0.262 (DCC)
R-Value Observed:
0.271 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history.

Literature

Possible transcriptional regulator from Methanosarcina mazei Go1 (gi 21227196)

Joachimiak, A., Duke, N.E.C., Li, H., Gu, M.

To be published.

Macromolecule Content

Total Structure Weight: 28.67 kDa
Atom Count: 2,035
Modeled Residue Count: 243
Deposited Residue Count: 246
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative transcriptional regulator	A, B	123	Methanosarcina mazei	Mutation(s): 0 Gene Names: MM_1094
UniProt
Find proteins for Q8PXX2 (Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)) Explore Q8PXX2 Go to UniProtKB: Q8PXX2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8PXX2
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.31 Å
R-Value Free: 0.363 (Depositor), 0.352 (DCC)
R-Value Work: 0.266 (Depositor), 0.262 (DCC)
R-Value Observed: 0.271 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.126	α = 90
b = 67.059	β = 90
c = 72.777	γ = 90

Software Package:

Software Name	Purpose
SBC-Collect	data collection
HKL-3000	phasing
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2011-03-23

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2011-03-23
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2013-01-23
Changes: Other
Version 1.3: 2024-11-20
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.