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Possible transcriptional regulator from Methanosarcina mazei Go1 (gi 21227196)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 298 Index screen, conditions #92 (H-8), 0.1M magnesium formate dihydrate, 15% w/v polyethylene glycol 3350, pH approximately 6.0
cryoprotected using Paratone-N, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.13 42.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.126 α = 90 b = 67.059 β = 90 c = 72.777 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r double crystal Si(111) monochromator, sagitally bent mirror 2010-08-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97934 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 78.6 9.8 11225 8825 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.31 49.32 10635 534 99.38 0.27083 0.26623 0.2624 0.36314 0.3524 RANDOM 51.191
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.69 -2.52 -0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.571 r_dihedral_angle_3_deg 21.819 r_dihedral_angle_4_deg 19.964 r_dihedral_angle_1_deg 7.313 r_scangle_it 3.587 r_scbond_it 2.115 r_mcangle_it 1.638 r_angle_refined_deg 1.502 r_mcbond_it 0.865 r_chiral_restr 0.099
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.571 r_dihedral_angle_3_deg 21.819 r_dihedral_angle_4_deg 19.964 r_dihedral_angle_1_deg 7.313 r_scangle_it 3.587 r_scbond_it 2.115 r_mcangle_it 1.638 r_angle_refined_deg 1.502 r_mcbond_it 0.865 r_chiral_restr 0.099 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1981 Nucleic Acid Atoms Solvent Atoms 54 Heterogen Atoms
Software Software Software Name Purpose SBC-Collect data collection HKL-3000 phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling