3FHW | pdb_00003fhw

Crystal structure of the protein priB from Bordetella parapertussis. Northeast Structural Genomics Consortium target BpR162.

• PDB DOI: https://doi.org/10.2210/pdb3FHW/pdb

• Classification: DNA BINDING PROTEIN
• Organism(s): Bordetella parapertussis
• Mutation(s): No 


• Deposited: 2008-12-10 Released: 2008-12-30 
• Deposition Author(s): Kuzin, A.P., Neely, H., Seetharaman, J., Forouhar, F., Wang, D., Mao, L., Maglaqui, M., Xiao, R., Liu, J., Baran, M.C., Acton, T.B., Rost, B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 
  0.289 (Depositor), 0.299 (DCC) 
• R-Value Work: 
  0.275 (Depositor) 
• R-Value Observed: 
  0.276 (Depositor) 

Literature

Crystal structure of the protein priB from Bordetella parapertussis. Northeast Structural Genomics Consortium target BpR162.

Kuzin, A.P., Neely, H., Seetharaman, J., Forouhar, F., Wang, D., Mao, L., Maglaqui, M., Xiao, R., Liu, J., Baran, M.C., Acton, T.B., Rost, B., Montelione, G.T., Hunt, J.F., Tong, L.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 25.57 kDa 
• Atom Count: 1,655 
• Modeled Residue Count: 200 
• Deposited Residue Count: 230 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Primosomal replication protein n	A, B	115	Bordetella parapertussis	Mutation(s): 0  Gene Names: priB, BPP2467
UniProt
Find proteins for P67675 (Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)) Explore P67675  Go to UniProtKB:  P67675

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PEG	F [auth B]	DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N
NA	C [auth A], D [auth A], E [auth B]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free:  0.289 (Depositor), 0.299 (DCC) 
• R-Value Work:  0.275 (Depositor) 
• R-Value Observed: 0.276 (Depositor) 

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 55.33	α = 90
b = 64.32	β = 90
c = 75.93	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
SnB	phasing
REFMAC	refinement
HKL-2000	data reduction
SCALEPACK	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-12-30 
Deposition Author(s): Kuzin, A.P., Neely, H., Seetharaman, J., Forouhar, F., Wang, D., Mao, L., Maglaqui, M., Xiao, R., Liu, J., Baran, M.C., Acton, T.B., Rost, B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

Revision History  

• Version 1.0: 2008-12-30
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Advisory, Refinement description, Version format compliance
• Version 1.2: 2017-11-01
  Changes: Advisory, Refinement description
• Version 1.3: 2024-11-20
  Changes: Advisory, Data collection, Database references, Derived calculations, Structure summary