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Crystal structure of the protein priB from Bordetella parapertussis. Northeast Structural Genomics Consortium target BpR162.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 297 0.1M MES, 1.5M NaCl, 0.1M NaH2PO4, 0.1M KH2PO4, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 2.66 53.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.33 α = 90 b = 64.32 β = 90 c = 75.93 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2007-11-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4C 0.979 NSLS X4C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 98.4 0.092 21.1 6 41038 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 92.2 0.299 3.3 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 22.43 18375 1006 100 0.27613 0.27544 0.28875 0.2987 RANDOM 23.793
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 0.1 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.552 r_dihedral_angle_4_deg 14.98 r_dihedral_angle_3_deg 14.707 r_dihedral_angle_1_deg 6.789 r_scangle_it 3.721 r_scbond_it 2.332 r_angle_refined_deg 1.258 r_mcangle_it 1.125 r_mcbond_it 0.571 r_symmetry_metal_ion_refined 0.423
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.552 r_dihedral_angle_4_deg 14.98 r_dihedral_angle_3_deg 14.707 r_dihedral_angle_1_deg 6.789 r_scangle_it 3.721 r_scbond_it 2.332 r_angle_refined_deg 1.258 r_mcangle_it 1.125 r_mcbond_it 0.571 r_symmetry_metal_ion_refined 0.423 r_nbtor_refined 0.294 r_symmetry_vdw_refined 0.276 r_nbd_refined 0.23 r_symmetry_hbond_refined 0.216 r_xyhbond_nbd_refined 0.142 r_chiral_restr 0.071 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1494 Nucleic Acid Atoms Solvent Atoms 121 Heterogen Atoms 10
Software Software Software Name Purpose ADSC data collection SnB phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling