Hexapeptide mimetics of LEDGF in complex with HIV-1 integrase
Northfield, S.E., Wielens, J., Headey, S.J., Mulcair, M., Scanlon, M.J., Parker, M.W., Thompson, P.E., Chalmers, D.K.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Gag-Pol polyprotein | 157 | Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE) | Mutation(s): 7  Gene Names: HIV-1 POL | ![]() | |
UniProt | |||||
Find proteins for P12497 (Human immunodeficiency virus type 1 group M subtype B (isolate NY5)) Explore P12497  Go to UniProtKB:  P12497 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P12497 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CD Query on CD | E [auth A], F [auth A], K [auth B], L [auth B] | CADMIUM ION Cd WLZRMCYVCSSEQC-UHFFFAOYSA-N | |||
SO4 Query on SO4 | H [auth A] I [auth A] J [auth A] N [auth B] O [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
CL Query on CL | G [auth A], M [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Entity ID: 2 | |||||
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ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_001214 Query on PRD_001214 | C, D | PKIDN(DPR) peptide | Cyclic peptide / Inhibitor |
Length ( Å ) | Angle ( ˚ ) |
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a = 50.25 | α = 90 |
b = 50.25 | β = 90 |
c = 102.71 | γ = 120 |
Software Name | Purpose |
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Blu-Ice | data collection |
REFMAC | refinement |
XDS | data reduction |
XDS | data scaling |