3WMJ | pdb_00003wmj

Crystal structure of EIAV vaccine gp45

PDB DOI: https://doi.org/10.2210/pdb3WMJ/pdb

Classification: VIRAL PROTEIN
Organism(s): Equus caballus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2013-11-19 Released: 2014-11-19
Deposition Author(s): Liu, X., Du, J., Qiao, W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.225 (Depositor), 0.225 (DCC)
R-Value Work:
0.187 (Depositor), 0.188 (DCC)
R-Value Observed:
0.189 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

A mutation associated with EIAV vaccine strain within heptad repeat of EIAV gp45 provides insight into vaccine development for HIV

Liu, X., Du, J., Qiao, W.

To be published.

Macromolecule Content

Total Structure Weight: 11.03 kDa
Atom Count: 836
Modeled Residue Count: 94
Deposited Residue Count: 94
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
EIAV vaccine gp45	A	57	Equus caballus	Mutation(s): 0
UniProt
Find proteins for E2E2L9 (Equine infectious anemia virus) Explore E2E2L9 Go to UniProtKB: E2E2L9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	E2E2L9
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
EIAV vaccine gp45	B	37	Equus caballus	Mutation(s): 0
UniProt
Find proteins for E2E2L9 (Equine infectious anemia virus) Explore E2E2L9 Go to UniProtKB: E2E2L9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	E2E2L9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.225 (Depositor), 0.225 (DCC)
R-Value Work: 0.187 (Depositor), 0.188 (DCC)
R-Value Observed: 0.189 (Depositor)

Space Group: P 6₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 46.947	α = 90
b = 46.947	β = 90
c = 101.605	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement

Structure Validation

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Entry History

Deposition Data

Released Date: 2014-11-19

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2014-11-19
Type: Initial release
Version 1.1: 2024-03-20
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.