Crystal structure of anti-Prostaglandin E2 Fab fragment with Prostaglandin E2
Sugahara, M., Ago, H., Saino, H., Miyano, M., Kurahashi, Y., Aoyama, S., Takehira, M., Yutani, K., Yamamoto, S.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
mAb Fab H fragment | 218 | Mus musculus | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
mAb Fab L fragment | 217 | Mus musculus | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
XPG Query on XPG | C [auth B] | 7-[(1R,3R)-3-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-5-oxocyclopentyl]heptanoic acid C20 H34 O5 GMVPRGQOIOIIMI-DWKJAMRDSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 70.46 | α = 90 |
b = 82.03 | β = 90 |
c = 82.31 | γ = 90 |
Software Name | Purpose |
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BSS | data collection |
MOLREP | phasing |
PHENIX | refinement |
MOSFLM | data reduction |
SCALA | data scaling |