Crystal Structure of Glycosyltransferase VinC Involved in the Biosynthesis of Vicenistatin
Nango, E., Minami, A., Kumasaka, T., Eguchi, T.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Glycosyltransferase | 419 | Streptomyces halstedii | Mutation(s): 0  Gene Names: vinC | ![]() | |
UniProt | |||||
Find proteins for Q76KZ6 (Streptomyces halstedii) Explore Q76KZ6  Go to UniProtKB:  Q76KZ6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q76KZ6 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
TYD Query on TYD | C [auth A], F [auth B] | THYMIDINE-5'-DIPHOSPHATE C10 H16 N2 O11 P2 UJLXYODCHAELLY-XLPZGREQSA-N | |||
PO4 Query on PO4 | D [auth A], G [auth B], H [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
MG Query on MG | E [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 98.829 | α = 90 |
b = 130.162 | β = 90 |
c = 139.787 | γ = 90 |
Software Name | Purpose |
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BSS | data collection |
REFMAC | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
REFMAC | phasing |