3W9U | pdb_00003w9u

Crystal structure of Lipk107

PDB DOI: https://doi.org/10.2210/pdb3W9U/pdb

Classification: HYDROLASE
Organism(s): Proteus mirabilis HI4320
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2013-04-17 Released: 2013-12-04
Deposition Author(s): Yuan, Y.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.215 (Depositor), 0.158 (DCC)
R-Value Work:
0.179 (Depositor), 0.146 (DCC)
R-Value Observed:
0.181 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 3W9U

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Lipk107

Yuan, Y.A.

To be published.

Macromolecule Content

Total Structure Weight: 31.96 kDa
Atom Count: 2,292
Modeled Residue Count: 274
Deposited Residue Count: 290
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative lipase	A	290	Proteus mirabilis HI4320	Mutation(s): 0 Gene Names: PMI0999 EC: 3.1.1.3
UniProt
Find proteins for B4EVM3 (Proteus mirabilis (strain HI4320)) Explore B4EVM3 Go to UniProtKB: B4EVM3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	B4EVM3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.215 (Depositor), 0.158 (DCC)
R-Value Work: 0.179 (Depositor), 0.146 (DCC)
R-Value Observed: 0.181 (Depositor)

Space Group: P 3₂

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 65.484	α = 90
b = 65.484	β = 90
c = 63.871	γ = 120

Software Package:

Software Name	Purpose
HKL-2000	data collection
PHASER	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2013-12-04

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2013-12-04
Type: Initial release
Version 1.1: 2023-11-08
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.