3VKI | pdb_00003vki

Monoclinic Crystal Structure of Salmonella FlgA in closed form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 
    0.281 (Depositor), 0.274 (DCC) 
  • R-Value Work: 
    0.251 (Depositor), 0.244 (DCC) 
  • R-Value Observed: 
    0.253 (Depositor) 

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This is version 1.2 of the entry. See complete history

Literature

Structural flexibility of the periplasmic protein, FlgA, regulates flagellar P-ring assembly in Salmonella enterica

Matsunami, H.Yoon, Y.H.Meshcheryakov, V.A.Namba, K.Samatey, F.A.

(2016) Sci Rep 6: 27399-27399

  • DOI: https://doi.org/10.1038/srep27399
  • Primary Citation Related Structures: 
    3TEE, 3VJP, 3VKI

  • PubMed Abstract: 

    A periplasmic flagellar chaperone protein, FlgA, is required for P-ring assembly in bacterial flagella of taxa such as Salmonella enterica or Escherichia coli. The mechanism of chaperone-mediated P-ring formation is poorly understood. Here we present the open and closed crystal structures of FlgA from Salmonella enterica serovar Typhimurium, grown under different crystallization conditions. An intramolecular disulfide cross-linked form of FlgA caused a dominant negative effect on motility of the wild-type strain. Pull-down experiments support a specific protein-protein interaction between FlgI, the P-ring component protein, and the C-terminal domain of FlgA. Surface plasmon resonance and limited-proteolysis indicate that flexibility of the domain is reduced in the covalently closed form. These results show that the structural flexibility of the C-terminal domain of FlgA, which is related to the structural difference between the two crystal forms, is intrinsically associated with its molecular chaperone function in P-ring assembly.


  • Organizational Affiliation
    • Trans-Membrane Trafficking Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna, Kunigami, Okinawa 904-0495, Japan.

Macromolecule Content 

  • Total Structure Weight: 94.62 kDa 
  • Atom Count: 6,166 
  • Modeled Residue Count: 792 
  • Deposited Residue Count: 876 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Flagella basal body P-ring formation protein flgA
A, B, C, D
219Salmonella enterica subsp. enterica serovar TyphimuriumMutation(s): 0 
Gene Names: flgA
UniProt
Find proteins for P40131 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
Explore P40131 
Go to UniProtKB:  P40131
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP40131
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free:  0.281 (Depositor), 0.274 (DCC) 
  • R-Value Work:  0.251 (Depositor), 0.244 (DCC) 
  • R-Value Observed: 0.253 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 53.926α = 90
b = 103.317β = 107.26
c = 85.501γ = 90
Software Package:
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-11-21
    Type: Initial release
  • Version 1.1: 2016-07-06
    Changes: Database references
  • Version 1.2: 2024-11-13
    Changes: Data collection, Database references, Structure summary