Prediction of immunogenicity of altered-peptide ligands for HIV therapy
Collins, E.J., Lee, H.Y.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
HLA class I histocompatibility antigen, A-2 alpha chain | 275 | Homo sapiens | Mutation(s): 0  Gene Names: HLA*0201, HLA-A, HLAA | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P04439 (Homo sapiens) Explore P04439  Go to UniProtKB:  P04439 | |||||
PHAROS:  P04439 GTEx:  ENSG00000206503  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P04439 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta-2-microglobulin | 100 | Homo sapiens | Mutation(s): 0  Gene Names: B2M, beta-2-microglobulin, CDABP0092, HDCMA22P | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P61769 (Homo sapiens) Explore P61769  Go to UniProtKB:  P61769 | |||||
PHAROS:  P61769 GTEx:  ENSG00000166710  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P61769 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
HIV-based altered-peptide ligand KVAEIVHFL | 9 | Homo sapiens | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for E0YFW1 (Human immunodeficiency virus 1) Explore E0YFW1  Go to UniProtKB:  E0YFW1 | |||||
Entity Groups   | |||||
UniProt Group | E0YFW1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GOL Query on GOL | G [auth D] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 62.798 | α = 90 |
b = 87.604 | β = 89.96 |
c = 79.769 | γ = 90 |
Software Name | Purpose |
---|---|
SCALEPACK | data scaling |
PHASER | phasing |
BUSTER-TNT | refinement |
PDB_EXTRACT | data extraction |
MAR345dtb | data collection |
DENZO | data reduction |
BUSTER | refinement |