3UTK | pdb_00003utk

Structure of the pilotin of the type II secretion system

PDB DOI: https://doi.org/10.2210/pdb3UTK/pdb

Classification: PROTEIN TRANSPORT
Organism(s): Dickeya dadantii 3937
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2011-11-25 Released: 2011-12-14
Deposition Author(s): Rehman, S., Pickersgill, R.W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.65 Å
R-Value Free:
0.250 (Depositor), 0.253 (DCC)
R-Value Work:
0.197 (Depositor), 0.203 (DCC)
R-Value Observed:
0.199 (Depositor)

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This is version 1.2 of the entry. See complete history.

Literature

Structure of the pilotin of the type II secretion system

Gu, S., Rehman, S., Wang, X., Shevchik, V.E., Pickersgill, R.W.

To be published.

Macromolecule Content

Total Structure Weight: 28.7 kDa
Atom Count: 1,660
Modeled Residue Count: 190
Deposited Residue Count: 266
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lipoprotein outS	A, B	133	Dickeya dadantii 3937	Mutation(s): 0 Gene Names: outS, Dda3937_02411
UniProt
Find proteins for Q01567 (Dickeya dadantii (strain 3937)) Explore Q01567 Go to UniProtKB: Q01567
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q01567
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.65 Å
R-Value Free: 0.250 (Depositor), 0.253 (DCC)
R-Value Work: 0.197 (Depositor), 0.203 (DCC)
R-Value Observed: 0.199 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.7	α = 90
b = 53.095	β = 90
c = 98.735	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
SOLVE	phasing
PHENIX	refinement
MOSFLM	data reduction
SCALA	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2011-12-14

Deposition Author(s):

Pickersgill, R.W.

Revision History (Full details and data files)

Version 1.0: 2011-12-14
Type: Initial release
Version 1.1: 2018-01-24
Changes: Database references
Version 1.2: 2024-10-30
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.