Structural Determinants of Trimerization Specificity in HIV-1 gp41 Protein
Liu, J., Li, Q., Dey, A.K., Moore, J.P., Lu, M.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Glycoprotein 41 | 53 | Human immunodeficiency virus type 1 (Z2/CDC-Z34 ISOLATE) | Mutation(s): 2  Gene Names: env | ||
UniProt | |||||
Find proteins for P12487 (Human immunodeficiency virus type 1 group M subtype D (isolate Z2/CDC-Z34)) Explore P12487  Go to UniProtKB:  P12487 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P12487 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MPD Query on MPD | E [auth A], F [auth B], G [auth B], H [auth C] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N | |||
CL Query on CL | D [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 78.027 | α = 90 |
b = 76.316 | β = 104.86 |
c = 65.731 | γ = 90 |
Software Name | Purpose |
---|---|
ADSC | data collection |
PHASER | phasing |
REFMAC | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |