3UEB | pdb_00003ueb

Crystal structure of TON_0450 from Thermococcus onnurineus NA1

PDB DOI: https://doi.org/10.2210/pdb3UEB/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Thermococcus onnurineus NA1
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-10-30 Released: 2012-10-10
Deposition Author(s): Kang, H.A., Ku, B., Doung, M., Oh, B.H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.98 Å
R-Value Free:
0.253 (Depositor), 0.258 (DCC)
R-Value Work:
0.206 (Depositor), 0.218 (DCC)

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of an Euryarchaeota-specific protein, TON_0450 from Thermococcus onnurineus NA1

Kang, H.A., Ku, B., Doung, M., Oh, B.H.

To be published.

Macromolecule Content

Total Structure Weight: 76.96 kDa
Atom Count: 5,166
Modeled Residue Count: 610
Deposited Residue Count: 660
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative uncharacterized protein	A, B, C, D, E A, B, C, D, E, F	110	Thermococcus onnurineus NA1	Mutation(s): 0 Gene Names: TON_0450
UniProt
Find proteins for B6YTZ3 (Thermococcus onnurineus (strain NA1)) Explore B6YTZ3 Go to UniProtKB: B6YTZ3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	B6YTZ3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.98 Å
R-Value Free: 0.253 (Depositor), 0.258 (DCC)
R-Value Work: 0.206 (Depositor), 0.218 (DCC)

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 108.059	α = 90
b = 108.059	β = 90
c = 127.603	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
SOLVE	phasing
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2012-10-10

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2012-10-10
Type: Initial release
Version 1.1: 2024-03-20
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.