3U7A | pdb_00003u7a

AL-09 Y32F Y96F

PDB DOI: https://doi.org/10.2210/pdb3U7A/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-10-13 Released: 2012-07-04
Deposition Author(s): DiCostanzo, A.C., Thompson, J.R., Ramirez-Alvarado, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.232 (Depositor), 0.227 (DCC)
R-Value Work:
0.201 (Depositor), 0.204 (DCC)
R-Value Observed:
0.203 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Tyrosine Residues mediate crucial interactions in amyloid formation for immunoglobulin light chains

DiCostanzo, A.C., Thompson, J.R., Peterson, F.C., Volkman, B.F., Ramirez-Alvarado, M.

To be published.

Macromolecule Content

Total Structure Weight: 12.1 kDa
Atom Count: 1,021
Modeled Residue Count: 107
Deposited Residue Count: 110
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Amyloidogenic immunoglobulin light chain protein AL-09 Y32F Y96F, variable domain	A	110	Homo sapiens	Mutation(s): 0

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.232 (Depositor), 0.227 (DCC)
R-Value Work: 0.201 (Depositor), 0.204 (DCC)
R-Value Observed: 0.203 (Depositor)

Space Group: P 6₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 52.12	α = 90
b = 52.12	β = 90
c = 156.47	γ = 120

Software Package:

Software Name	Purpose
CrystalClear	data collection
PHASER	phasing
PHENIX	refinement
CrystalClear	data reduction
CrystalClear	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2012-07-04

Deposition Author(s):

DiCostanzo, A.C.

Thompson, J.R.

Ramirez-Alvarado, M.

Revision History (Full details and data files)

Version 1.0: 2012-07-04
Type: Initial release
Version 1.1: 2024-11-06
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.