3TYR

Crystal structure of transcriptional regulator VanUg, Form I

• PDB DOI: https://doi.org/10.2210/pdb3TYR/pdb
• Entry: 3TYR supersedes: 3T75

• Classification: TRANSCRIPTION
• Organism(s): Enterococcus faecalis
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2011-09-26 Released: 2011-10-12 
• Deposition Author(s): Stogios, P.J., Evdokimova, E., Wawrzak, Z., Dong, A., Depardieu, F., Courvalin, P., Shabalin, I., Chruszcz, M., Minor, W., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 0.198 
• R-Value Work: 0.157 
• R-Value Observed: 0.160 

Literature

Crystal structure of transcriptional regulator VanUg, Form I

Stogios, P.J., Evdokimova, E., Wawrzak, Z., Dong, A., Depardieu, F., Courvalin, P., Shabalin, I., Chruszcz, M., Minor, W., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 20.35 kDa 
• Atom Count: 1,447 
• Modelled Residue Count: 149 
• Deposited Residue Count: 176 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcriptional regulator	A, B	88	Enterococcus faecalis	Mutation(s): 0  Gene Names: vanU, vanUG
UniProt
Find proteins for Q6WRY9 (Enterococcus faecalis) Explore Q6WRY9  Go to UniProtKB:  Q6WRY9

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 0.198 
• R-Value Work: 0.157 
• R-Value Observed: 0.160 
• Space Group: P 2₁ 2₁ 2₁
• Diffraction Data: https://doi.org/10.18430/m34k5x

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 52.246	α = 90
b = 53.022	β = 90
c = 55.58	γ = 90

Software Package:

Software Name	Purpose
StructureStudio	data collection
PHENIX	model building
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-10-12 
Deposition Author(s): Stogios, P.J., Evdokimova, E., Wawrzak, Z., Dong, A., Depardieu, F., Courvalin, P., Shabalin, I., Chruszcz, M., Minor, W., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)
• This entry supersedes: 3T75

Revision History  

• Version 1.0: 2011-10-12
  Type: Initial release
  
• Version 1.1: 2011-10-19
  Changes: Other, Structure summary
• Version 1.2: 2014-05-14
  Changes: Database references
• Version 1.3: 2022-04-13
  Changes: Database references, Derived calculations, Structure summary
• Version 1.4: 2024-11-27
  Changes: Data collection, Structure summary