3TY7

Crystal Structure of Aldehyde Dehydrogenase family Protein from Staphylococcus aureus

• PDB DOI: https://doi.org/10.2210/pdb3TY7/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Staphylococcus aureus subsp. aureus Mu50
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2011-09-23 Released: 2011-10-19 
• Deposition Author(s): Kim, Y., Joachimiak, G., Jedrzejczak, R., Rubin, E., Ioerger, T., Sacchettini, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG), Structures of Mtb Proteins Conferring Susceptibility to Known Mtb Inhibitors (MTBI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.212 
• R-Value Work: 0.185 
• R-Value Observed: 0.186 

Literature

Crystal Structure of Aldehyde Dehydrogenase family Protein from Staphylococcus aureus

Kim, Y., Joachimiak, G., Jedrzejczak, R., Rubin, E., Ioerger, T., Sacchettini, J., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 106.14 kDa 
• Atom Count: 7,246 
• Modelled Residue Count: 906 
• Deposited Residue Count: 956 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative aldehyde dehydrogenase SAV2122	A, B	478	Staphylococcus aureus subsp. aureus Mu50	Mutation(s): 0  Gene Names: SAV2122 EC: 1.2.1.3
UniProt
Find proteins for Q99SD6 (Staphylococcus aureus (strain Mu50 / ATCC 700699)) Explore Q99SD6  Go to UniProtKB:  Q99SD6

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PEG	F [auth A], L [auth B]	DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N
GOL	C [auth A], D [auth A], E [auth A], G [auth B], H [auth B], I [auth B], K [auth B]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N
MG	J [auth B]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.212 
• R-Value Work: 0.185 
• R-Value Observed: 0.186 
• Space Group: H 3
• Diffraction Data: https://doi.org/10.18430/M33TY7

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 173.448	α = 90
b = 173.448	β = 90
c = 96.569	γ = 120

Software Package:

Software Name	Purpose
SBC-Collect	data collection
HKL-3000	data collection
HKL-3000	phasing
SHELXS	phasing
MLPHARE	phasing
RESOLVE	model building
SOLVE	phasing
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
RESOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-10-19 
Deposition Author(s): Kim, Y., Joachimiak, G., Jedrzejczak, R., Rubin, E., Ioerger, T., Sacchettini, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG), Structures of Mtb Proteins Conferring Susceptibility to Known Mtb Inhibitors (MTBI)

Revision History  

• Version 1.0: 2011-10-19
  Type: Initial release
  
• Version 1.1: 2024-10-16
  Changes: Data collection, Database references, Derived calculations, Structure summary