3TB8 | pdb_00003tb8

Crystal structure of full-length myristoylated HIV-1 Nef

PDB DOI: https://doi.org/10.2210/pdb3TB8/pdb

Classification: APOPTOSIS
Organism(s): Human immunodeficiency virus type 1 BH10
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2011-08-05 Released: 2012-10-03
Deposition Author(s): Dennis, C.A., Harris, M., Jaeger, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.71 Å
R-Value Free:
0.337 (Depositor), 0.538 (DCC)
R-Value Work:
0.231 (Depositor), 0.513 (DCC)
R-Value Observed:
0.233 (Depositor)

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This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of full-length myristoylated HIV-1 Nef

Dennis, C.A., Harris, M., Jaeger, J.

To be published.

Macromolecule Content

Total Structure Weight: 23.46 kDa
Atom Count: 203
Modeled Residue Count: 203
Deposited Residue Count: 206
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein Nef	A	206	Human immunodeficiency virus type 1 BH10	Mutation(s): 1 Gene Names: nef
UniProt
Find proteins for P03404 (Human immunodeficiency virus type 1 group M subtype B (isolate BH10)) Explore P03404 Go to UniProtKB: P03404
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P03404
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.71 Å
R-Value Free: 0.337 (Depositor), 0.538 (DCC)
R-Value Work: 0.231 (Depositor), 0.513 (DCC)
R-Value Observed: 0.233 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 89.33	α = 90
b = 89.33	β = 90
c = 27.78	γ = 90

Software Package:

Software Name	Purpose
CrystalClear	data collection
PHENIX	model building
PHENIX	refinement
MOSFLM	data reduction
SCALA	data scaling
PHENIX	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2012-10-03

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2012-10-03
Type: Initial release
Version 1.1: 2022-12-21
Changes: Database references
Version 1.2: 2024-05-22
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.