Download MendeleyThermolysin Inhibition
Biela, A., Nasief, N., Heine, A., Hangauer, D., Klebe, G.To be published.
3T8D
Thermolysin In Complex With UBTLN31
- PDB DOI: https://doi.org/10.2210/pdb3T8D/pdb
- Classification: HYDROLASE/HYDROLASE INHIBITOR
- Organism(s): Bacillus thermoproteolyticus
- Mutation(s): No
- Deposited: 2011-08-01 Released: 2012-08-01
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.41 Å
- R-Value Free: 0.153
- R-Value Work: 0.126
- R-Value Observed: 0.128
Starting Model: experimental
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This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| UBV Query on UBV | B [auth A] | N-[(S)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-L-leucyl-L-isoleucine C21 H34 N3 O7 P WXJWRPSIWAFMIG-SZMVWBNQSA-N |  | ||
| GOL Query on GOL | C [auth A], D [auth A], E [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| DMS Query on DMS | F [auth A], G [auth A], H [auth A], I [auth A] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N |  | ||
| ZN Query on ZN | J [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| CA Query on CA | K [auth A], L [auth A], M [auth A], N [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
| PRD_000984 (UBV) Query on PRD_000984 | B [auth A] | N-[(S)-({[(BENZYLOXY)CARBONYL]AMINO}METHYL)(HYDROXY)PHOSPHORYL]-L-LEUCYL-L-ISOLEUCINE | Peptide-like / Inhibitor | | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.41 Å
- R-Value Free: 0.153
- R-Value Work: 0.126
- R-Value Observed: 0.128
- Space Group: P 61 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 92.8 | α = 90 |
| b = 92.8 | β = 90 |
| c = 130.1 | γ = 120 |
| Software Name | Purpose |
|---|---|
| MAR345dtb | data collection |
| PHASER | phasing |
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Revision History (Full details and data files)
- Version 1.0: 2012-08-01
Type: Initial release - Version 1.1: 2012-12-12
Changes: Other - Version 1.2: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description
