3SJM | pdb_00003sjm

Crystal Structure Analysis of TRF2-Dbd-DNA complex

• PDB DOI: https://doi.org/10.2210/pdb3SJM/pdb
• NAKB: 3SJM

• Classification: DNA/DNA binding protein
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2011-06-21 Released: 2012-10-31 
• Deposition Author(s): Nair, S.K., Sliverman, S.K., Chen, J.H., Xiao, Y.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.35 Å
• R-Value Free: 
  0.208 (Depositor), 0.209 (DCC) 
• R-Value Work: 
  0.172 (Depositor), 0.176 (DCC) 
• R-Value Observed: 
  0.174 (Depositor) 

Literature

Crystal Structure Analysis of TRF2-Dbd-DNA complex

Nair, S.K., Sliverman, S.K., Chen, J.H., Xiao, Y.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 26.01 kDa 
• Atom Count: 1,941 
• Modeled Residue Count: 144 
• Deposited Residue Count: 164 
• Unique protein chains: 1
• Unique nucleic acid chains: 2

Macromolecules

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Telomeric repeat-binding factor 2	C [auth A], D [auth B]	64	Homo sapiens	Mutation(s): 0  Gene Names: telomeric repeat binding factor 2, TERF2, TRBF2, TRF2
UniProt & NIH Common Fund Data Resources
Find proteins for Q15554 (Homo sapiens) Explore Q15554  Go to UniProtKB:  Q15554
PHAROS:  Q15554 GTEx:  ENSG00000132604

Entity ID: 1
Molecule	Chains	Length	Organism	Image
DNA (5'-D(*CP*TP*CP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*G)-3')	A [auth C]	18	N/A

Entity ID: 2
Molecule	Chains	Length	Organism	Image
DNA (5'-D(*TP*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP*CP*CP*CP*TP*AP*GP*A)-3')	B [auth D]	18	N/A

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.35 Å
• R-Value Free:  0.208 (Depositor), 0.209 (DCC) 
• R-Value Work:  0.172 (Depositor), 0.176 (DCC) 
• R-Value Observed: 0.174 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 44.073	α = 90
b = 47.454	β = 90
c = 108.172	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2012-10-31 
Deposition Author(s): Nair, S.K., Sliverman, S.K., Chen, J.H., Xiao, Y.

Revision History  

• Version 1.0: 2012-10-31
  Type: Initial release
  
• Version 1.1: 2024-02-28
  Changes: Data collection, Database references