3S6P | pdb_00003s6p

Crystal Structure of Helicoverpa Armigera Stunt Virus

• PDB DOI: https://doi.org/10.2210/pdb3S6P/pdb

• Classification: VIRUS
• Organism(s): Helicoverpa armigera stunt virus
• Expression System: Spodoptera frugiperda
• Mutation(s): No 


• Deposited: 2011-05-25 Released: 2012-05-30 
• Deposition Author(s): Speir, J.A., Chen, Z., Taylor, D.J., Johnson, J.E.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Work: 
  0.237 (Depositor), 0.240 (DCC) 
• R-Value Observed: 
  0.240 (Depositor) 

Starting Model: experimental

Literature

Crystal Structure of Helicoverpa armigera stunt virus

Speir, J.A., Natarajan, P., Taylor, D.J., Chen, Z., Johnson, J.E.

To be published.

Biological Assembly 1  

Global Symmetry: Icosahedral - I  (Explore in 3D)
Global Stoichiometry: Hetero 480-mer - A240B120C60D60 

Biological assembly 1 assigned by authors and generated by (software)

Macromolecule Content 

• Total Structure Weight: 283.17 kDa 
• Atom Count: 19,383 
• Modeled Residue Count: 2,319 
• Deposited Residue Count: 2,588 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein	A, C [auth B], E [auth C], G [auth D]	575	Helicoverpa armigera stunt virus	Mutation(s): 0  Gene Names: capsid protein
UniProt
Find proteins for Q82462 (Helicoverpa armigera stunt virus) Explore Q82462  Go to UniProtKB:  Q82462

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein	B [auth E], D [auth F], F [auth G], H	72	Helicoverpa armigera stunt virus	Mutation(s): 0  Gene Names: capsid protein
UniProt
Find proteins for Q82462 (Helicoverpa armigera stunt virus) Explore Q82462  Go to UniProtKB:  Q82462

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CA	I [auth B], J [auth C]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N
CL	K [auth C], L [auth D]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Work:  0.237 (Depositor), 0.240 (DCC) 
• R-Value Observed: 0.240 (Depositor) 

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 404.12	α = 119.2
b = 405.57	β = 114.44
c = 406.04	γ = 94.79

Software Package:

Software Name	Purpose
SCALEPACK	data scaling
CNS	refinement
PDB_EXTRACT	data extraction
DENZO	data reduction
GLRF	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2012-05-30 
Deposition Author(s): Speir, J.A., Chen, Z., Taylor, D.J., Johnson, J.E.

Revision History  

• Version 1.0: 2012-05-30
  Type: Initial release
  
• Version 1.1: 2023-09-13
  Changes: Data collection, Database references, Derived calculations, Refinement description