3RPU | pdb_00003rpu

Crystal structure of the MukE-MukF complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.60 Å
  • R-Value Free: 
    0.274 (Depositor), 0.268 (DCC) 
  • R-Value Work: 
    0.217 (Depositor), 0.209 (DCC) 
  • R-Value Observed: 
    0.220 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history

Literature

The role of MukE in assembling a functional MukBEF complex.

Gloyd, M.Ghirlando, R.Guarne, A.

(2011) J Mol Biology 412: 578-590

  • DOI: https://doi.org/10.1016/j.jmb.2011.08.009
  • Primary Citation Related Structures: 
    3RPU

  • PubMed Abstract: 

    The MukB-MukE-MukF protein complex is essential for chromosome condensation and segregation in Escherichia coli. The central component of this complex, the MukB protein, is related functionally and structurally to the ubiquitous SMC (structural maintenance of chromosomes) proteins. In a manner similar to SMC, MukB requires the association of two accessory proteins (MukE and MukF) for its function. MukF is a constitutive dimer that bridges the interaction between MukB and MukE. While MukB can condense DNA on its own, it requires MukF and MukE to ensure proper chromosome segregation. Here, we present a novel structure of the E. coli MukE-MukF complex, in which the intricate crystal packing interactions reveal an alternative MukE dimerization interface spanning both N- and C-terminal winged-helix domains of the protein. The structure also unveils additional cross-linking interactions between adjacent MukE-MukF complexes mediated by MukE. A variant of MukE encompassing point mutations on one of these surfaces does not affect assembly of the MukB-MukE-MukF complex and yet cannot restore the temperature sensitivity of the mukE∷kan strain, suggesting that this surface may mediate critical protein-protein interactions between MukB-MukE-MukF complexes. Since the dimerization interface of MukE overlaps with the region of the protein that interacts with MukB in the MukB-MukE-MukF complex, we suggest that competing MukB-MukE and MukE-MukE interactions may regulate the formation of higher-order structures of bacterial condensin.


  • Organizational Affiliation
    • Department of Biochemistry and Biomedical Sciences, HSC-4N57A, McMaster University, Hamilton, ON, Canada L8S 4K1.

Macromolecule Content 

  • Total Structure Weight: 327.55 kDa 
  • Atom Count: 17,083 
  • Modeled Residue Count: 2,103 
  • Deposited Residue Count: 2,850 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Chromosome partition protein mukFA,
D [auth B],
G [auth X]
460Escherichia coli K-12Mutation(s): 0 
Gene Names: b0922JW0905kicBmukFmukF (kicB)
UniProt
Find proteins for P60293 (Escherichia coli (strain K12))
Explore P60293 
Go to UniProtKB:  P60293
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP60293
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Chromosome partition protein mukE245Escherichia coli K-12Mutation(s): 0 
Gene Names: b0923JW0906kicAmukEMukE (kicAycbAycbA)
UniProt
Find proteins for P22524 (Escherichia coli (strain K12))
Explore P22524 
Go to UniProtKB:  P22524
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP22524
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.60 Å
  • R-Value Free:  0.274 (Depositor), 0.268 (DCC) 
  • R-Value Work:  0.217 (Depositor), 0.209 (DCC) 
  • R-Value Observed: 0.220 (Depositor) 
Space Group: P 65 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 149.89α = 90
b = 149.89β = 90
c = 738.551γ = 120
Software Package:
Software NamePurpose
CBASSdata collection
PHASERphasing
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-03-14
    Type: Initial release
  • Version 1.1: 2023-09-13
    Changes: Data collection, Database references, Refinement description