3RP1

Crystal structure of Human LAIR-1 in C2 space group

• PDB DOI: https://doi.org/10.2210/pdb3RP1/pdb

• Classification: IMMUNE SYSTEM
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2011-04-26 Released: 2011-06-15 
• Deposition Author(s): Sampathkumar, P., Ramagopal, U.A., Yan, Q., Toro, R., Nathenson, S., Bonanno, J., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 0.293 
• R-Value Work: 0.211 
• R-Value Observed: 0.217 

Starting Model: experimental

Literature

Crystal structure of Human LAIR-1 in C2 space group

Sampathkumar, P., Ramagopal, U.A., Yan, Q., Toro, R., Nathenson, S., Bonanno, J., Almo, S.C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 assigned by authors and generated by PISA (software)

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 4 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 46.45 kDa 
• Atom Count: 3,033 
• Modelled Residue Count: 388 
• Deposited Residue Count: 412 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Leukocyte-associated immunoglobulin-like receptor 1	A, B, C, D	103	Homo sapiens	Mutation(s): 0  Gene Names: CD305, LAIR-1, LAIR1
UniProt & NIH Common Fund Data Resources
Find proteins for Q6GTX8 (Homo sapiens) Explore Q6GTX8  Go to UniProtKB:  Q6GTX8
PHAROS:  Q6GTX8 GTEx:  ENSG00000167613

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 0.293 
• R-Value Work: 0.211 
• R-Value Observed: 0.217 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 91.117	α = 90
b = 77.261	β = 120.18
c = 64.94	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
ADSC	data collection
HKL-2000	data reduction
SCALEPACK	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-06-15 
Deposition Author(s): Sampathkumar, P., Ramagopal, U.A., Yan, Q., Toro, R., Nathenson, S., Bonanno, J., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

Revision History  

• Version 1.0: 2011-06-15
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2023-09-13
  Changes: Data collection, Database references, Refinement description
• Version 1.3: 2024-11-20
  Changes: Structure summary