3R6P | pdb_00003r6p

Crystal structure of abscisic acid-bound PYL10

PDB DOI: https://doi.org/10.2210/pdb3R6P/pdb

Classification: HORMONE RECEPTOR
Organism(s): Arabidopsis thaliana
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-03-22 Released: 2011-12-21
Deposition Author(s): Sun, D.M., Wu, M.H., Wang, H.P., Zang, J.Y., Tian, C.L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free:
0.278 (Depositor), 0.275 (DCC)
R-Value Work:
0.239 (Depositor), 0.229 (DCC)
R-Value Observed:
0.243 (Depositor)

Starting Model: experimental
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Literature

Crystal structure of abscisic acid-bound PYL10

Sun, D.M., Wu, M.H., Wang, H.P., Zang, J.Y., Tian, C.L.

To be published.

Macromolecule Content

Total Structure Weight: 22.01 kDa
Atom Count: 1,238
Modeled Residue Count: 154
Deposited Residue Count: 191
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Abscisic acid receptor PYL10	A	191	Arabidopsis thaliana	Mutation(s): 0 Gene Names: PYL10
UniProt
Find proteins for Q8H1R0 (Arabidopsis thaliana) Explore Q8H1R0 Go to UniProtKB: Q8H1R0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8H1R0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
A8S Query on A8S Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	(2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid C₁₅ H₂₀ O₄ JLIDBLDQVAYHNE-YKALOCIXSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free: 0.278 (Depositor), 0.275 (DCC)
R-Value Work: 0.239 (Depositor), 0.229 (DCC)
R-Value Observed: 0.243 (Depositor)

Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 68.327	α = 90
b = 68.327	β = 90
c = 63.396	γ = 120

Software Package:

Software Name	Purpose
HKL-2000	data collection
PHASES	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2011-12-21

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-12-21
Type: Initial release
Version 1.1: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary
Version 1.2: 2024-10-30
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.