3QWM | pdb_00003qwm

Crystal Structure of GEP100, the plextrin homology domain of IQ motif and SEC7 domain-containing protein 1 isoform a

PDB DOI: https://doi.org/10.2210/pdb3QWM/pdb

Classification: SIGNALING PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-02-28 Released: 2011-04-13
Deposition Author(s): Filippakopoulos, P., Picaud, S., Felletar, I., Feller, S., Janning, M., Sabe, H., Krojer, T., Chaikuad, A., Allerston, C., von Delft, F., Bountra, C., Arrowsmith, C.H., Weigelt, J., Edwards, A., Knapp, S., Structural Genomics Consortium (SGC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.39 Å
R-Value Free:
0.272 (Depositor), 0.265 (DCC)
R-Value Work:
0.242 (Depositor), 0.240 (DCC)
R-Value Observed:
0.244 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3QWM

This is version 1.2 of the entry. See complete history.

Literature

Crystal Structure of GEP100, the plextrin homology domain of IQ motif and SEC7 domain-containing protein 1 isoform a

Filippakopoulos, P., Picaud, S., Felletar, I., Feller, S., Janning, M., Sabe, H., Krojer, T., Chaikuad, A., Allerston, C., von Delft, F., Bountra, C., Arrowsmith, C.H., Weigelt, J., Edwards, A., Knapp, S.

To be published.

Macromolecule Content

Total Structure Weight: 16.43 kDa
Atom Count: 1,051
Modeled Residue Count: 127
Deposited Residue Count: 140
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
IQ motif and SEC7 domain-containing protein 1	A	140	Homo sapiens	Mutation(s): 0 Gene Names: IQSEC1
UniProt & NIH Common Fund Data Resources
Find proteins for Q6DN90 (Homo sapiens) Explore Q6DN90 Go to UniProtKB: Q6DN90
PHAROS: Q6DN90 GTEx: ENSG00000144711
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q6DN90
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.39 Å
R-Value Free: 0.272 (Depositor), 0.265 (DCC)
R-Value Work: 0.242 (Depositor), 0.240 (DCC)
R-Value Observed: 0.244 (Depositor)

Space Group: P 6₅ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 56.73	α = 90
b = 56.73	β = 90
c = 234.08	γ = 120

Software Package:

Software Name	Purpose
GDA	data collection
SHARP	phasing
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2011-04-13

Deposition Author(s):

Filippakopoulos, P.

Arrowsmith, C.H.

Structural Genomics Consortium (SGC)

Revision History (Full details and data files)

Version 1.0: 2011-04-13
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2024-03-20
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.