3QRL | pdb_00003qrl

Crystal Structure of the Taf14 YEATS domain

PDB DOI: https://doi.org/10.2210/pdb3QRL/pdb

Classification: NUCLEAR PROTEIN
Organism(s): Saccharomyces cerevisiae
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-02-18 Released: 2012-02-29
Deposition Author(s): Simpson, P.J., Warren, A.J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free:
0.235 (Depositor), 0.255 (DCC)
R-Value Work:
0.188 (Depositor), 0.206 (DCC)
R-Value Observed:
0.190 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of the Taf14 YEATS domain

Simpson, P.J., Warren, A.J.

To be published.

Macromolecule Content

Total Structure Weight: 16.2 kDa
Atom Count: 1,284
Modeled Residue Count: 137
Deposited Residue Count: 140
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcription initiation factor TFIID subunit 14	A	140	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: ANC1, CST10, SWP29, TAF14, TAF30, TFG3, YPL129W
UniProt
Find proteins for P35189 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P35189 Go to UniProtKB: P35189
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P35189
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PGE Query on PGE Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	TRIETHYLENE GLYCOL C₆ H₁₄ O₄ ZIBGPFATKBEMQZ-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.235 (Depositor), 0.255 (DCC)
R-Value Work: 0.188 (Depositor), 0.206 (DCC)
R-Value Observed: 0.190 (Depositor)

Space Group: P 6₅

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 113.019	α = 90
b = 113.019	β = 90
c = 26.329	γ = 120

Software Package:

Software Name	Purpose
XDS	data scaling
autoSHARP	phasing
REFMAC	refinement
XDS	data reduction

Structure Validation

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Entry History

Deposition Data

Released Date: 2012-02-29

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2012-02-29
Type: Initial release
Version 1.1: 2024-02-21
Changes: Data collection, Database references, Derived calculations

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.