3QHP | pdb_00003qhp

Crystal structure of the catalytic domain of cholesterol-alpha-glucosyltransferase from Helicobacter pylori

PDB DOI: https://doi.org/10.2210/pdb3QHP/pdb

Classification: TRANSFERASE
Organism(s): Helicobacter pylori 26695
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-01-26 Released: 2011-06-29
Deposition Author(s): Lee, S.J., Lee, B.I., Suh, S.W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free:
0.227 (Depositor), 0.226 (DCC)
R-Value Work:
0.196 (Depositor), 0.195 (DCC)
R-Value Observed:
0.198 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of the catalytic domain of cholesterol-alpha-glucosyltransferase from Helicobacter pylori

Lee, S.J., Lee, B.I., Suh, S.W.

(2011) Proteins 79: 2321-2326

PubMed: 21557320 Search on PubMed
DOI: https://doi.org/10.1002/prot.23038
Primary Citation Related Structures:
3QHP

Organizational Affiliation

Department of Chemistry, College of Natural Sciences, Seoul National University, Seoul 151-742, Korea.

Macromolecule Content

Total Structure Weight: 37.16 kDa
Atom Count: 2,784
Modeled Residue Count: 310
Deposited Residue Count: 332
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Type 1 capsular polysaccharide biosynthesis protein J (CapJ)	A, B	166	Helicobacter pylori 26695	Mutation(s): 0 Gene Names: HP0421
UniProt
Find proteins for O25175 (Helicobacter pylori (strain ATCC 700392 / 26695)) Explore O25175 Go to UniProtKB: O25175
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O25175
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free: 0.227 (Depositor), 0.226 (DCC)
R-Value Work: 0.196 (Depositor), 0.195 (DCC)
R-Value Observed: 0.198 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 35.786	α = 101.44
b = 40.714	β = 94.87
c = 53.738	γ = 90.58

Software Package:

Software Name	Purpose
HKL-2000	data collection
SOLVE	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2011-06-29

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-06-29
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2024-03-20
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.