3Q64 | pdb_00003q64

X-ray crystal structure of protein mll3774 from Mesorhizobium loti, Northeast Structural Genomics Consortium Target MlR405.

PDB DOI: https://doi.org/10.2210/pdb3Q64/pdb

Classification: Structure Genomics, unknown function
Organism(s): Mesorhizobium loti
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2010-12-30 Released: 2011-01-12
Deposition Author(s): Forouhar, F., Lew, S., Seetharaman, J., Wang, D., Ciccosanti, C., Sahdev, S., Nair, R., Rost, B., Acton, T.B., Xiao, R., Everett, J.K., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free:
0.195 (Depositor), 0.207 (DCC)
R-Value Work:
0.177 (Depositor), 0.193 (DCC)
R-Value Observed:
0.179 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

X-ray crystal structure of protein mll3774 from Mesorhizobium loti, Northeast Structural Genomics Consortium Target MlR405.

Forouhar, F., Lew, S., Seetharaman, J., Wang, D., Ciccosanti, C., Sahdev, S., Nair, R., Rost, B., Acton, T.B., Xiao, R., Everett, J.K., Montelione, G.T., Hunt, J.F., Tong, L.

To be published.

Macromolecule Content

Total Structure Weight: 18.42 kDa
Atom Count: 1,488
Modeled Residue Count: 155
Deposited Residue Count: 162
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Mll3774 protein	A	162	Mesorhizobium loti	Mutation(s): 0 Gene Names: mll3774
UniProt
Find proteins for Q98FH6 (Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099)) Explore Q98FH6 Go to UniProtKB: Q98FH6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q98FH6
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free: 0.195 (Depositor), 0.207 (DCC)
R-Value Work: 0.177 (Depositor), 0.193 (DCC)
R-Value Observed: 0.179 (Depositor)

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 86.378	α = 90
b = 86.378	β = 90
c = 57.69	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
SHELX	model building
CNS	refinement
ADSC	data collection
CNS	refinement
XTALVIEW	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
SHELX	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2011-01-12

Deposition Author(s):

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2011-01-12
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2012-02-22
Changes: Structure summary
Version 1.3: 2019-07-17
Changes: Data collection, Derived calculations, Refinement description
Version 1.4: 2024-11-06
Changes: Data collection, Database references, Structure summary