3PU2 | pdb_00003pu2

Crystal Structure of the Q3J4M4_RHOS4 protein from Rhodobacter sphaeroides. Northeast Structural Genomics Consortium Target RhR263.

PDB DOI: https://doi.org/10.2210/pdb3PU2/pdb

Classification: Structure Genomics, unknown function
Organism(s): Cereibacter sphaeroides 2.4.1
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2010-12-03 Released: 2010-12-15
Deposition Author(s): Vorobiev, S., Chen, Y., Seetharaman, J., Sahdev, S., Xiao, R., Ciccosanti, C., Wang, D., Everett, J.K., Nair, R., Acton, T.B., Rost, B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.61 Å
R-Value Free:
0.263 (Depositor), 0.255 (DCC)
R-Value Work:
0.230 (Depositor), 0.225 (DCC)
R-Value Observed:
0.231 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal Structure of the Q3J4M4_RHOS4 protein from Rhodobacter sphaeroides.

Vorobiev, S., Chen, Y., Seetharaman, J., Sahdev, S., Xiao, R., Ciccosanti, C., Wang, D., Everett, J.K., Nair, R., Acton, T.B., Rost, B., Montelione, G.T., Hunt, J.F., Tong, L.

To be published.

Macromolecule Content

Total Structure Weight: 148.16 kDa
Atom Count: 9,371
Modeled Residue Count: 1,201
Deposited Residue Count: 1,312
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
uncharacterized protein	A, B, C, D, E A, B, C, D, E, F, G, H	164	Cereibacter sphaeroides 2.4.1	Mutation(s): 0 Gene Names: RHOS4_06920, RSP_2105
UniProt
Find proteins for Q3J4M4 (Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)) Explore Q3J4M4 Go to UniProtKB: Q3J4M4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q3J4M4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D, E A, B, C, D, E, F, G, H	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.61 Å
R-Value Free: 0.263 (Depositor), 0.255 (DCC)
R-Value Work: 0.230 (Depositor), 0.225 (DCC)
R-Value Observed: 0.231 (Depositor)

Space Group: P 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 75.214	α = 90
b = 35.856	β = 98.98
c = 230.468	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
ADSC	data collection
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2010-12-15

Deposition Author(s):

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2010-12-15
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2012-02-22
Changes: Structure summary
Version 1.3: 2024-11-27
Changes: Data collection, Database references, Derived calculations, Structure summary