3PEA | pdb_00003pea

Crystal structure of enoyl-CoA hydratase from Bacillus anthracis str. 'Ames Ancestor'

PDB DOI: https://doi.org/10.2210/pdb3PEA/pdb

Classification: ISOMERASE
Organism(s): Bacillus anthracis str. 'Ames Ancestor
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2010-10-25 Released: 2010-11-03
Deposition Author(s): Filippova, E.V., Wawrzak, Z., Kudritska, M., Edwards, A., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.82 Å
R-Value Free:
0.194 (Depositor), 0.198 (DCC)
R-Value Work:
0.162 (Depositor), 0.167 (DCC)
R-Value Observed:
0.164 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of enoyl-CoA hydratase from Bacillus anthracis str. 'Ames Ancestor'

Filippova, E.V., Wawrzak, Z., Kudritska, M., Edwards, A., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecule Content

Total Structure Weight: 172.87 kDa
Atom Count: 12,808
Modeled Residue Count: 1,542
Deposited Residue Count: 1,566
Unique protein chains: 1

Macromolecules

Find similar proteins by:

| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Enoyl-CoA hydratase/isomerase family protein	A, B, C, D, E A, B, C, D, E, F	261	Bacillus anthracis str. 'Ames Ancestor	Mutation(s): 0 Gene Names: BAS4420, BA_4761, GBAA4761, GBAA_4761
UniProt
Find proteins for A0A6L7GYV0 (Bacillus anthracis) Explore A0A6L7GYV0 Go to UniProtKB: A0A6L7GYV0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A6L7GYV0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PG4 Query on PG4 Download:Ideal Coordinates CCD File SDF format, chain P [auth F] SDF format, chain M [auth D] SDF format, chain K [auth C] SDF format, chain H [auth A] MOL2 format, chain P [auth F] MOL2 format, chain M [auth D] MOL2 format, chain K [auth C] MOL2 format, chain H [auth A] mmCIF format, chain P [auth F] mmCIF format, chain M [auth D] mmCIF format, chain K [auth C] mmCIF format, chain H [auth A]	H [auth A], K [auth C], M [auth D], P [auth F]	TETRAETHYLENE GLYCOL C₈ H₁₈ O₅ UWHCKJMYHZGTIT-UHFFFAOYSA-N		Interactions Focus chain H [auth A] Focus chain K [auth C] Focus chain M [auth D] Focus chain P [auth F] Interactions & Density Focus chain H [auth A] Focus chain K [auth C] Focus chain M [auth D] Focus chain P [auth F]
FLC Query on FLC Download:Ideal Coordinates CCD File SDF format, chain N [auth E] SDF format, chain L [auth D] SDF format, chain I [auth B] SDF format, chain G [auth A] MOL2 format, chain N [auth E] MOL2 format, chain L [auth D] MOL2 format, chain I [auth B] MOL2 format, chain G [auth A] mmCIF format, chain N [auth E] mmCIF format, chain L [auth D] mmCIF format, chain I [auth B] mmCIF format, chain G [auth A]	G [auth A], I [auth B], L [auth D], N [auth E]	CITRATE ANION C₆ H₅ O₇ KRKNYBCHXYNGOX-UHFFFAOYSA-K		Interactions Focus chain G [auth A] Focus chain I [auth B] Focus chain L [auth D] Focus chain N [auth E] Interactions & Density Focus chain G [auth A] Focus chain I [auth B] Focus chain L [auth D] Focus chain N [auth E]
ACT Query on ACT Download:Ideal Coordinates CCD File SDF format, chain O [auth E] SDF format, chain J [auth B] MOL2 format, chain O [auth E] MOL2 format, chain J [auth B] mmCIF format, chain O [auth E] mmCIF format, chain J [auth B]	J [auth B], O [auth E]	ACETATE ION C₂ H₃ O₂ QTBSBXVTEAMEQO-UHFFFAOYSA-M		Interactions Focus chain J [auth B] Focus chain O [auth E] Interactions & Density Focus chain J [auth B] Focus chain O [auth E]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D, E A, B, C, D, E, F	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.82 Å
R-Value Free: 0.194 (Depositor), 0.198 (DCC)
R-Value Work: 0.162 (Depositor), 0.167 (DCC)
R-Value Observed: 0.164 (Depositor)

Diffraction Data:

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 68.954	α = 89.04
b = 75.123	β = 90.01
c = 89.49	γ = 75.47

Software Package:

Software Name	Purpose
Blu-Ice	data collection
PHENIX	model building
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2010-11-03

Deposition Author(s):

Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History (Full details and data files)

Version 1.0: 2010-11-03
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2017-11-08
Changes: Refinement description
Version 1.3: 2024-04-03
Changes: Data collection, Database references, Derived calculations, Refinement description
Version 1.4: 2024-11-27
Changes: Structure summary