3P51 | pdb_00003p51

Three-dimensional structure of protein Q2Y8N9_NITMU from nitrosospira multiformis, Northeast structural genomics consortium target NMR118

PDB DOI: https://doi.org/10.2210/pdb3P51/pdb

Classification: Structural genomics, Unknown function
Organism(s): Nitrosospira multiformis ATCC 25196
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2010-10-07 Released: 2010-10-27
Deposition Author(s): Kuzin, A., Chen, Y., Seetharaman, J., Sahdev, S., Xiao, R., Ciccosanti, C., Lee, D., Everett, J.K., Nair, R., Acton, T.B., Rost, B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.06 Å
R-Value Free:
0.223 (Depositor), 0.219 (DCC)
R-Value Work:
0.191 (Depositor), 0.186 (DCC)
R-Value Observed:
0.194 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Northeast Structural Genomics Consortium Target NmR118

Kuzin, A., Chen, Y., Seetharaman, J., Sahdev, S., Xiao, R., Ciccosanti, C., Lee, D., Everett, J.K., Nair, R., Acton, T.B., Rost, B., Montelione, G.T., Hunt, J.F., Tong, L.

To be published.

Macromolecule Content

Total Structure Weight: 18.42 kDa
Atom Count: 1,291
Modeled Residue Count: 145
Deposited Residue Count: 160
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein	A	160	Nitrosospira multiformis ATCC 25196	Mutation(s): 0 Gene Names: Nmul_A1581
UniProt
Find proteins for Q2Y8N9 (Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849 / C 71)) Explore Q2Y8N9 Go to UniProtKB: Q2Y8N9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q2Y8N9
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.06 Å
R-Value Free: 0.223 (Depositor), 0.219 (DCC)
R-Value Work: 0.191 (Depositor), 0.186 (DCC)
R-Value Observed: 0.194 (Depositor)

Space Group: P 6₄ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 80.409	α = 90
b = 80.409	β = 90
c = 108.256	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-2000	data collection
HKL-2000	data reduction
SCALEPACK	data scaling
AutoSol	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2010-10-27

Deposition Author(s):

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2010-10-27
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2012-02-22
Changes: Structure summary
Version 1.3: 2024-10-30
Changes: Data collection, Database references, Derived calculations, Source and taxonomy, Structure summary