3P39 | pdb_00003p39

Crystal structure of the NS1 effector domain W182A mutant from influenza A/Vietnam/1203/2004 (H5N1) virus

PDB DOI: https://doi.org/10.2210/pdb3P39/pdb

Classification: VIRAL PROTEIN
Organism(s): Influenza A virus (A/environment/Viet Nam/1203/2004(H5N1))
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2010-10-04 Released: 2011-10-05
Deposition Author(s): Chen, S., Xiao, Y.B., Bricogne, G., Sharff, A.J., Hilgenfeld, R.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.14 Å
R-Value Free:
0.237 (Depositor), 0.240 (DCC)
R-Value Work:
0.207 (Depositor), 0.213 (DCC)
R-Value Observed:
0.208 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

X-ray structures of the NS1 effector domain from highly pathogenic influenza A/Vietnam/1203/2004 (H5N1) virus

Chen, S., Xiao, Y.B., Bricogne, G., Sharff, A.J., Hilgenfeld, R.

To be published.

Macromolecule Content

Total Structure Weight: 98.08 kDa
Atom Count: 5,900
Modeled Residue Count: 741
Deposited Residue Count: 882
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Nonstructural protein 1	A, B, C, D, E A, B, C, D, E, F	147	Influenza A virus (A/environment/Viet Nam/1203/2004(H5N1))	Mutation(s): 1 Gene Names: NS1
UniProt
Find proteins for D1LP63 (Influenza A virus) Explore D1LP63 Go to UniProtKB: D1LP63
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	D1LP63
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.14 Å
R-Value Free: 0.237 (Depositor), 0.240 (DCC)
R-Value Work: 0.207 (Depositor), 0.213 (DCC)
R-Value Observed: 0.208 (Depositor)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 113.489	α = 90
b = 113.489	β = 90
c = 197.441	γ = 90

Software Package:

Software Name	Purpose
BUSTER-TNT	refinement
PDB_EXTRACT	data extraction
MxCuBE	data collection
MOSFLM	data reduction
SCALA	data scaling
MOLREP	phasing
BUSTER	refinement

Structure Validation

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Entry History

Deposition Data

Released Date: 2011-10-05

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-10-05
Type: Initial release
Version 1.1: 2023-11-01
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.