3OUG

Crystal structure of cleaved L-aspartate-alpha-decarboxylase from Francisella tularensis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.197 
  • R-Value Work: 0.172 
  • R-Value Observed: 0.172 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Crystal structure of cleaved L-aspartate-alpha-decarboxylase from Francisella tularensis

Nocek, B.Gu, M.Papazisi, L.Anderson, W.Joachimiak, A.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Aspartate 1-decarboxylase114Francisella tularensis subsp. tularensis SCHU S4Mutation(s): 0 
EC: 4.1.1.11
UniProt
Find proteins for Q5NF56 (Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4))
Explore Q5NF56 
Go to UniProtKB:  Q5NF56
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5NF56
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download Ideal Coordinates CCD File 
K [auth A]
N [auth C]
P [auth F]
Q [auth G]
T [auth H]
K [auth A],
N [auth C],
P [auth F],
Q [auth G],
T [auth H],
U [auth H]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
CL
Query on CL

Download Ideal Coordinates CCD File 
I [auth A]
J [auth A]
L [auth B]
M [auth C]
O [auth F]
I [auth A],
J [auth A],
L [auth B],
M [auth C],
O [auth F],
R [auth G],
S [auth H],
V [auth I]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A
B
C
D [auth E]
E [auth F]
A,
B,
C,
D [auth E],
E [auth F],
F [auth G],
G [auth H],
H [auth I]
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 79.934α = 90
b = 80.525β = 104.33
c = 85.025γ = 90
Software Package:
Software NamePurpose
SBC-Collectdata collection
Auto-Rickshawphasing
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-10-20
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2023-09-06
    Changes: Data collection, Database references, Derived calculations, Refinement description
  • Version 1.3: 2023-12-06
    Changes: Data collection