3OTV

Crystal structure of the intracellular domain of Rv3910 from Mycobacterium tuberculosis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.09 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.192 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

A phosphorylated pseudokinase complex controls cell wall synthesis in mycobacteria

Gee, C.L.Papavinasasundaram, K.G.Blair, S.R.Baer, C.E.Falick, A.M.King, D.S.Griffin, J.E.Venghatakrishnan, H.Zukauskas, A.Wei, J.R.Dhiman, R.K.Crick, D.C.Rubin, E.J.Sassetti, C.M.Alber, T.

(2012) Sci Signal 5: ra7-ra7

  • DOI: https://doi.org/10.1126/scisignal.2002525
  • Primary Citation of Related Structures:  
    3OTV, 3OUK, 3OUN, 3UQC

  • PubMed Abstract: 

    Prokaryotic cell wall biosynthesis is coordinated with cell growth and division, but the mechanisms regulating this dynamic process remain obscure. Here, we describe a phosphorylation-dependent regulatory complex that controls peptidoglycan (PG) biosynthesis in Mycobacterium tuberculosis. We found that PknB, a PG-responsive Ser-Thr protein kinase (STPK), initiates complex assembly by phosphorylating a kinase-like domain in the essential PG biosynthetic protein, MviN. This domain was structurally diverged from active kinases and did not mediate phosphotransfer. Threonine phosphorylation of the pseudokinase domain recruited the FhaA protein through its forkhead-associated (FHA) domain. The crystal structure of this phosphorylated pseudokinase-FHA domain complex revealed the basis of FHA domain recognition, which included unexpected contacts distal to the phosphorylated threonine. Conditional degradation of these proteins in mycobacteria demonstrated that MviN was essential for growth and PG biosynthesis and that FhaA regulated these processes at the cell poles and septum. Controlling this spatially localized PG regulatory complex is only one of several cellular roles ascribed to PknB, suggesting that the capacity to coordinate signaling across multiple processes is an important feature conserved between eukaryotic and prokaryotic STPK networks.


  • Organizational Affiliation

    Department of Molecular and Cell Biology, QB3 Institute, University of California, Berkeley, Berkeley, CA 94720-3220, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
PROBABLE CONSERVED TRANSMEMBRANE PROTEIN
A, B, C, D
285Mycobacterium tuberculosis H37RvMutation(s): 0 
Gene Names: MT4029Rv3910
UniProt
Find proteins for P9WJK3 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
Explore P9WJK3 
Go to UniProtKB:  P9WJK3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP9WJK3
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.09 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.192 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 58.037α = 90
b = 59.687β = 97.21
c = 145.063γ = 90
Software Package:
Software NamePurpose
ELVESrefinement
PHENIXmodel building
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-02-08
    Type: Initial release
  • Version 1.1: 2017-11-08
    Changes: Advisory, Refinement description
  • Version 1.2: 2023-11-01
    Changes: Advisory, Data collection, Database references, Refinement description